1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttggaacaatcttgtgtgtcggttgtttatgcacctggtgctttttaatggaattcaatttgattaatttgttttaataattttaatattttttcttcagGTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAAC
species | Glycine max |
transcript | GLYMA13G38430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGC GTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAGEST: gi|207837316|gb|GD806136.1|GD806136
genomic: AAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtcacc ... ttttcttcagGTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAG
EST: AAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGC GTTCTTTAAGGAGTGTCCGCACCCTGATGATAAAEST: gi|10844704|gb|BF067925.1|BF067925
genomic: AAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtcacc ... ttttcttcagGTTCTTTAAGGAGTGTCCGCACCCTGATGATAAA
EST: GCCACACTCAGCACCAGATCCAGGAGATGGAAGC GTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAG
genomic: GCCACACTCAGCACCAGATCCAGGAGATGGAAGCgtaagtcacc ... ttttcttcagGTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAG
taatggaattcaatttgattaatttgttttaataattttaatattttttcttcagGTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAAC
ttttaat putative branch site (score: 3)
tattttttcttc CT-rich tract
aatttgattaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggaacaatcttgtgtgtcggttgtttatgcacctggtgctttttaatggaattcaatttgattaatttgttttaataattttaatattttttcttcagGTTCTTTAAGGAGTGTCCGCACCCTGATGATAAACAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAAC
- - - - - - tgtgtgt
- - - - - - - - - - ggttgtt
- - - - - - - - - - - - - - -tgcacct
- - - - - - - - - - - - - - - - - - ggtgctt