1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccttaaacatagttatgtatgcttctctacttttacgttttggcttagcaagagcacgattactcatattgttccttgctctgactgatatcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG
species | Glycine max |
transcript | GLYMA13G38420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|192330257|gb|FK020557.1|FK020557
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|151404234|gb|EV274044.1|EV274044
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|151411010|gb|EV280821.1|EV280821
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|209715859|gb|BW674418.1|BW674418
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|21594409|gb|BQ610149.1|BQ610149
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|57574392|gb|CX547367.1|CX547367
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|18038971|gb|BM307265.1|BM307265
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|209715858|gb|BW674417.1|BW674417
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|7589690|gb|AW705459.1|AW705459
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|163921009|gb|EH039455.1|EH039455
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGCAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|57574160|gb|CX547135.1|CX547135
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|21677079|gb|BQ629430.1|BQ629430
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGAEST: gi|213587487|gb|DB979107.1|DB979107
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGA
EST: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG GAGTTTGTAACCATGCTTTTCACTTCCGATA-CATAAGCCGATGGCTCAAG
genomic: CCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGgtacgctcta ... tcttgtacagGAGTTTGTAACCATGCTTTTCACTTCC-ATTGCATAAGCCGATGGCTCAAG
tagcaagagcacgattactcatattgttccttgctctgactgatatcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG
gactgat putative branch site (score: 3)
atattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttaaacatagttatgtatgcttctctacttttacgttttggcttagcaagagcacgattactcatattgttccttgctctgactgatatcttgtacagGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG
- - - - - - - - gtatgct