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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatactattttttatgttcatttttatgaattgaacattaaatttactttaaaatgtcagtaatttatcttactgatttgatgttgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT

Basic information

species Glycine max
transcript GLYMA13G37610.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G078985_T01 (Zea mays), 3'ss of exon 2
aatactattttttatgttcatttttatgaattgaac-attaaatttactt-taaaatgtcagtaatttatcttactgatttgatgttgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT
  |  | |  | |  | |      ||| | |  ||| ||| | |  || | |    | |    |  | |   |  || | ||   |  | |||| | | |||||| |||||||| ||||| ||  | |||||||||||||| ||||| || || ||||||||||||||||||||||| ||  | || |||||||| ||||| 
--ttatgtgctatgagatgtcaactataactcaaactattgattacacatgttggctcttgagatgtcaaactggtgttctgtgctgatattgtctttgcagTGGACCACGTGAGGATGCCACCCGTATTGGTTCAGCTGGTGTTGTGAGAAGGCAGGCTGTGGATATCTCACCCCTGAGAAGGGTGAACCAGGCCATCTAC

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G156673_T02 (Zea mays), 3'ss of exon 1
--aatactattttttatgttcatttttatgaattgaacattaaatttactttaaaatgtcagtaatttatcttactgatttgatgt--tgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT
   ||  |  |||| || |       ||| |  | || ||  |  |||| |      ||| || |  | |   |||| | ||||||  || | |  |  | |||||| || ||||| ||||| ||  | |||||||| ||||| ||||| ||||| ||||| ||||||||||||||||| ||| | || |||||||| ||||| 
gtcatg-tgcttttgatatgggaaactat-agctcaatatatagcttacatgttgg-gtc-gtgagatgtgaaactgttgtgatgtgctgctattgtcttgcagTGGACCCCGTGAGGATGCCACCCGTATTGGTTCCGCTGGTGTTGTGAGGAGGCAGGCCGTGGATATCTCACCCCTGAGGAGGGTGAACCAGGCCATCTAC

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G37270.1 (Arabidopsis thaliana), 3'ss of exon 3
-aatactat--tttttatgttcatttttatgaattgaacattaaatttactttaaaatgtcagtaatttatcttactgatttgatgttgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT
  ||| ||   ||  |||  | |    | | || |     ||   |     |||  |||     ||| ||  | |     ||  |||| |||   | | | |||||||||||||||||||| || || ||||| || ||||| || |||||||| |||||||| |||||||| || || || ||||| ||||| || ||||  
gtatattaagattgctatactgaaacctgtaaaat---tcttgcgtgcttgttactatgaactgaatctaattaagaaggtt--tgttctttatgtgaattagTGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTAGGAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAGCGATCTTC

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G11940.2 (Arabidopsis thaliana), 3'ss of exon 3
aatactattttttatgttcatttttatgaattgaacattaaatttactttaaaatgtcagtaatttat-cttactgatttgatgttgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT
            ||    | || | | | ||     | ||   | | |  || | |  |  | ||||| |||| | || |  ||||  ||  || |  ||||||||||||||||||||| || |||||||| || ||||| |||||||||||||| ||||| |||||||| || || || |||||||||||||||||||  
-----------gtactaaccttgtgaagtatgctgaaatagtatcattggaacaagg-aacattttattcttattaatgttttgtttgttgcttgagccagTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTAGGAGACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAGGCTATCTTC

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ17708 (Selaginella moellendorffii), 3'ss of exon 3
aatactattttttatgttcatttttatgaattgaacattaaatttactttaaaatgtcagtaatttatctt-actgatttgatgttgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT
                                          |  |  |  | || ||  |  |  | ||| | ||||||   ||   ||  |   | ||||||||| ||||||||||| ||| |||| ||||| ||||| || || ||| | |||||||| |||||||| || ||  | || || || || || || || 
-----------------------------------------gtagagctatagatctctttgttacaacttcattgatttttcgtc-cttcctgcttgcagTGGTCCTCGTGAAGATGCTACACGAATCGGTTCCGCTGGTGTGGTGAGGCGTCAGGCTGTTGATATCTCGCCTCTGCGTCGCGTGAATCAAGCCATTTAC

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ16239 (Selaginella moellendorffii), 3'ss of exon 3
aatactattttttatgttcatttttatgaattgaacattaaatttactttaaaatgtcagtaatttatctt-actgatttgatgttgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT
                                          |  |  |  | || ||  |  |  | ||| | ||||||   ||   ||  |   | ||||||||| ||||||||||| ||| |||| ||||| ||||| || || ||| | |||||||| |||||||| || ||  |||| || || || || || || 
-----------------------------------------gtagagctatagatctctttgttacaacttcattgatttttcgtc-cttcctgcttgcagTGGTCCTCGTGAAGATGCTACACGAATCGGTTCCGCTGGTGTGGTGAGGCGTCAGGCTGTTGATATCTCGCCTCTGCGGCGCGTGAATCAAGCCATTTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208150777|gb|GD944662.1|GD944662
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGGG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298189092|gb|HO037495.1|HO037495
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAACTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298197761|gb|HO039300.1|HO039300
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|213591768|gb|DB973375.1|DB973375
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192311727|gb|FK004890.1|FK004890
EST:     TCGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|7286025|gb|AW598512.1|AW598512
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192318613|gb|FK006201.1|FK006201
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|13251955|gb|BG362858.1|BG362858
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192302059|gb|FG995207.1|FG995207
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|41145604|gb|CK605815.1|CK605815
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|213613503|gb|DB963247.1|DB963247
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|21677923|gb|BQ630274.1|BQ630274
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAAC
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAAC
EST: gi|192318612|gb|FK006200.1|FK006200
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298168229|gb|HO013492.1|HO013492
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCCGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298174697|gb|HO014728.1|HO014728
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGGAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|193310504|gb|FK276332.1|FK276332
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192316629|gb|FK009342.1|FK009342
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|209705580|gb|BW653058.1|BW653058
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|209721226|gb|BW665743.1|BW665743
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298195095|gb|HO043623.1|HO043623
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298184337|gb|HO029550.1|HO029550
EST:     TTGACTGGCCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298168169|gb|HO013432.1|HO013432
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|193631042|gb|FK579093.1|FK579093
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298181168|gb|HO022607.1|HO022607
EST:     TTGACTGATCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|19345772|gb|BM890652.1|BM890652
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|151410162|gb|EV279970.1|EV279970
EST:     TCGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|20075981|gb|BQ094764.1|BQ094764
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298189388|gb|HO037791.1|HO037791
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAA                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|5688206|gb|AI941221.1|AI941221
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|58017722|gb|CX704464.1|CX704464
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|17400615|gb|BM177397.1|BM177397
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192323417|gb|FK015303.1|FK015303
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|9259270|gb|BE347478.1|BE347478
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGGTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|58024410|gb|CX711151.1|CX711151
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|151411621|gb|EV281432.1|EV281432
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|58024285|gb|CX711026.1|CX711026
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298189006|gb|HO035731.1|HO035731
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|9439837|gb|BE440350.1|BE440350
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTACGAA
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|6913225|gb|AW394755.1|AW394755
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|214006789|gb|DB988338.1|DB988338
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192318960|gb|FK009040.1|FK009040
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|208322823|gb|GE125580.1|GE125580
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTTGGTTTCAGCTGGAGTTGTTAGG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATT-GGTT-CAGCTGGAGTTGTTAGG
EST: gi|209721227|gb|BW665744.1|BW665744
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192324881|gb|FK016082.1|FK016082
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|193332242|gb|FK300324.1|FK300324
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298180084|gb|HO025299.1|HO025299
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192316235|gb|FK011636.1|FK011636
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|20811740|gb|BQ296218.1|BQ296218
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|19054172|gb|BM732839.1|BM732839
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|58014348|gb|CX701090.1|CX701090
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192298022|gb|FG991302.1|FG991302
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|21678140|gb|BQ630491.1|BQ630491
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298180083|gb|HO025298.1|HO025298
EST:     TTGACTGACCAGAACCCCATTCATGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|151395695|gb|EV265572.1|EV265572
EST:     TTGACTGACCGGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGCCCACGTGAGGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|209700858|gb|BW683088.1|BW683088
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCTACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192311728|gb|FK004891.1|FK004891
EST:     TCGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298172295|gb|HO019335.1|HO019335
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|23732886|gb|BU764620.1|BU764620
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|151402084|gb|EV271897.1|EV271897
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298181855|gb|HO026030.1|HO026030
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|193397539|gb|FK361557.1|FK361557
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|192299872|gb|FG987830.1|FG987830
EST:     TTGACTGACCAGAACTCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298166059|gb|HO009030.1|HO009030
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGC-GGAGTTG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTG
EST: gi|298186440|gb|HO037073.1|HO037073
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|213587920|gb|DB971409.1|DB971409
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|10843344|gb|BF066647.1|BF066647
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|9203746|gb|BE329970.1|BE329970
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG
EST: gi|298164139|gb|HO013784.1|HO013784
EST:     TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAG                         TGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGCTGTTAGGAG
genomic: TTGACTGACCAGAACCCCATTCAGGTTATTGTTGAAGCTGTTGTCAACAGgtatgtatgg ... gtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttaaaatgtcagtaatttatcttactgatttgatgttgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT
                                         ttttgttt  CT-rich tract
             agtaatttatctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatactattttttatgttcatttttatgaattgaacattaaatttactttaaaatgtcagtaatttatcttactgatttgatgttgttttgtttattcagTGGTCCACGTGAAGATGCAACAAGAATTGGTTCAGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTTAGGCGTGTTAACCAGGCTATCTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgttg