1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatttgtggaaaaaatgtattaatataaaagctgcatactatatttaattatagcttgatcatgtgatatgaatgacgaataattctactttgtatgtagGGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCAGGTGAATTCTATATCAAATCCATGATTGAATCAGATCGGGCCGCTTTCC
species | Glycine max |
transcript | GLYMA13G37570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTTACCCCAGAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATG GGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCAEST: gi|13125587|gb|BG316157.1|BG316157
genomic: ATGTTACCCCAGAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATGgtaagtcttt ... ttgtatgtagGGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCA
EST: ATGTTACCCCAGAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATG GGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCAEST: gi|209706902|gb|BW683216.1|BW683216
genomic: ATGTTACCCCAGAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATGgtaagtcttt ... ttgtatgtagGGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCA
EST: ATGTTACCCCAGAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATG GGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCAEST: gi|213588187|gb|DB979237.1|DB979237
genomic: ATGTTACCCCAGAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATGgtaagtcttt ... ttgtatgtagGGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCA
EST: GAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATG GGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCA
genomic: GAGGCCTTTGATAAGTATCAGAAACTTGGCATGGAAATGgtaagtcttt ... ttgtatgtagGGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCA
taattatagcttgatcatgtgatatgaatgacgaataattctactttgtatgtagGGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCAGGTGAATTCTATATCAAATCCATGATTGAATCAGATCGGGCCGCTTTCC
ttctacttt CT-rich tract
aataattctacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgtggaaaaaatgtattaatataaaagctgcatactatatttaattatagcttgatcatgtgatatgaatgacgaataattctactttgtatgtagGGCTTTCGATATGTGGCATCTGGGCCCATGGTGAGGTCATCATACAAGGCAGGTGAATTCTATATCAAATCCATGATTGAATCAGATCGGGCCGCTTTCC
- - - - -aaaaaat
- - - - - - - - - - - - - - - - -gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatga