Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcagtcttggaatagcttttactcaaaaggagtttcctcttcagaatactttatcctttcatcccctacctaacccaagtatgttttggttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACT

Basic information

species Glycine max
transcript GLYMA13G36690.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407354|gb|EV277169.1|EV277169
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|193621952|gb|FK567326.1|FK567326
EST:     TCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: TCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|213605462|gb|DB966955.1|DB966955
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|58017492|gb|CX704234.1|CX704234
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|298166008|gb|HO008979.1|HO008979
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|209720746|gb|BW657748.1|BW657748
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAGAGCATATGAG                         TCTGCTACCGCTGCAGC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGC
EST: gi|151411607|gb|EV281418.1|EV281418
EST:     CAGGTAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|193425370|gb|FK387845.1|FK387845
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|193367729|gb|FK332499.1|FK332499
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCCATCCG
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCC-ATCCG
EST: gi|13789247|gb|BG651838.1|BG651838
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCA
EST: gi|151403064|gb|EV272874.1|EV272874
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|213600585|gb|DB960133.1|DB960133
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|209719364|gb|BW674442.1|BW674442
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|209725077|gb|BW659785.1|BW659785
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|15813608|gb|BI785883.1|BI785883
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCT
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCT
EST: gi|254316527|gb|GR828064.1|GR828064
EST:     CA-GC-ATGAGAAGAA-GAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|209725078|gb|BW659786.1|BW659786
EST:     CTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCG
genomic: CTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTA-CCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCG
EST: gi|298187900|gb|HO031857.1|HO031857
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|193337192|gb|FK302922.1|FK302922
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTA
EST: gi|209729013|gb|BW651765.1|BW651765
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCT
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCT
EST: gi|17963820|gb|BM270564.1|BM270564
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|6482317|gb|AW201586.1|AW201586
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|12690801|gb|BG157137.1|BG157137
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGA
EST: gi|209721040|gb|BW666297.1|BW666297
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|207718168|gb|GD698788.1|GD698788
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCAATCCG
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCA-TCCG
EST: gi|209724785|gb|BW672568.1|BW672568
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|193430900|gb|FK393706.1|FK393706
EST:     AGGCAATGAGGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTTGATTTACCTCCCACACATCCCATCCG
genomic: AGGCAATGA-GAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGC-TGATTTACCTCCCACACATCCCATCCG
EST: gi|209729014|gb|BW651766.1|BW651766
EST:     TGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: TGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|6566303|gb|AW233976.1|AW233976
EST:     CATGCAATGAGAAGAAAGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTATCGCTGC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGC
EST: gi|16997097|gb|BM086469.1|BM086469
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|209709689|gb|BW668225.1|BW668225
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|208262337|gb|GE060580.1|GE060580
EST:     AAGCTGCTGATCAGTCTATGAAGGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: AAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|213607166|gb|DB967015.1|DB967015
EST:     CAGGCAATGAGAAGAGGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGC
EST: gi|7146400|gb|AW508322.1|AW508322
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|209703001|gb|BW656058.1|BW656058
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|298178495|gb|HO024230.1|HO024230
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|23726510|gb|BU761249.1|BU761249
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|16348539|gb|BI974134.1|BI974134
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAG
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAG
EST: gi|209719931|gb|BW666014.1|BW666014
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|24205692|gb|BU964945.1|BU964945
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGGCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|27427519|gb|CA939039.1|CA939039
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCC
EST: gi|213598761|gb|DB968232.1|DB968232
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATC
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATC
EST: gi|209705111|gb|BW653334.1|BW653334
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAAGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|21285870|gb|BQ473741.1|BQ473741
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|6567114|gb|AW234741.1|AW234741
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATNTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|9258319|gb|BE346466.1|BE346466
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|10848239|gb|BF071695.1|BF071695
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|9258572|gb|BE346719.1|BE346719
EST:     CACGCAATGAGACGAATGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGATGCTGATTTACCTTCCACACATGCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|58022604|gb|CX709345.1|CX709345
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|193732844|gb|FK668173.1|FK668173
EST:     TCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: TCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|193313360|gb|FK282017.1|FK282017
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|151403934|gb|EV273744.1|EV273744
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|6666341|gb|AW277800.1|AW277800
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|254316526|gb|GR828063.1|GR828063
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|151398789|gb|EV268660.1|EV268660
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCCA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|192304318|gb|FG993574.1|FG993574
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG                         TCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA
EST: gi|8669351|gb|BE190458.1|BE190458
EST:     CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGGAAGCATATGAG                         TCTGCTTCCGCTGGAGCAGAGGCTGATTTTCCTCCCACACATCCCATCCGA
genomic: CAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGgtgcaattta ... gttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatactttatcctttcatcccctacctaacccaagtatgttttggttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACT
                        acctaac  putative branch site (score: 2)
                                    tatgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatcagtcttggaatagcttttactcaaaaggagtttcctcttcagaatactttatcctttcatcccctacctaacccaagtatgttttggttattgcagTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - -cctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg