Sequence
atgc intronic sequence ATGC exonic sequencegtatgaggttttctctgtttgcaatttagtttgatatgttgttcttgctcctcaattcttttgaaattttgtaatgattgagttgggatgtgatgtctagATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTA
Basic information
species | Glycine max |
transcript | GLYMA13G36570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G36570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G045330_T02 (Zea mays), 3'ss of exon 4
gtatgaggttttctctgtttgcaatttagtt--tgatatgttgttcttgc---tcctcaattcttttgaaattttgtaatgattgagttgggatgtgatgtctagATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTA
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--------gtttgtcaaccagcagcttaactcttgtgagactgccaatgcgtgctctcattgttttgctaattgtcttcttctttt-ttgtgatgtt---tgcagCTTTTTAGAGGCCTAGCTTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTGAAGCCACAAAACGTTTTG
upper sequence: GLYMA13G36570.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G045330_T01 (Zea mays), 3'ss of exon 4
gtatgaggttttctctgtttgcaatttagt--ttgatatgttgttcttgc---tcctcaattcttttgaaattttgtaatgattgagttgggatgtgatgtctagATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTA-------------------------
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--------gtttgtcaaccagcagcttaactcttgtgagactgccaatgcgtgctctcattgttttgctaattgtcttcttctttt-ttgtgatgtt---tgcagCTTTTTAGAGGCCTAGCTTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTGAAGCCACAAAACGTTTTGGTATGTGTCATGTGGACAAGGATTT
upper sequence: GLYMA13G36570.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 3'ss of exon 4
gtatgaggttttctctgtttgcaatttagtttgatatgttgttcttgctcctcaattcttttgaaattttgtaatgattgagttgggatgtgatgtctagATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTA
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gtatgtaatgattttgtttctcca---ggatttgcatatttttcct--tttttggtactcctgac-cctgatagtaagtga---aaaatgct-taatcagATTTTTAGGGGGCTGGCCTATATTCATACAGTGCCTGGGGTTTGCCATAGGGATGTGAAGCCTCAAAATGTTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17402010|gb|BM178792.1|BM178792EST: TGAAATTATATACATATCAA ATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGG
genomic: TGAAATTATATACATATCAAgtatgaggtt ... tgatgtctagATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctcctcaattcttttgaaattttgtaatgattgagttgggatgtgatgtctagATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTA
aattcttttgaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaggttttctctgtttgcaatttagtttgatatgttgttcttgctcctcaattcttttgaaattttgtaatgattgagttgggatgtgatgtctagATCTTTAGGGGACTGGCGTATATCCACACTGTACCAGGAATTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC