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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgttgcgaagtattaaggtatcatgtagtcaatatttctgtatgatctttccgcttgtttgccaatctaaaccttttatgttcttttattttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAAGGACAACACATGCTTGTATATGTCTACATGAGTA

Basic information

species Glycine max
transcript GLYMA13G36140.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36140.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 3'ss of exon 2
ctgttgcgaagtattaaggtatcatgtagtcaatatttctgtatgatctttccgcttgtttgccaatctaaaccttttatgttcttttatt--ttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAAGGACAACACATGCTTGTATATGTCTACATGAGTA
|| |     ||  |  | | || |   | || |||| ||| ||   ||||      || ||       | ||    | ||   ||    ||  | || |||||||||||| ||||||||||| |||||  | || || || || ||| | || || |||||||| ||||| |||||||||||| ||||||| ||||||||||
ctataagacaggctacatgaatga-acaatctatatatct-tactctcttagtatctgcttagtttcttgaaaaactcatccactcgccttaatcttttcagGTTATGTTATTGGGAAGGTTGCATCACCGTAACCTAGTGAACTTGATTGGATACTGTGCAGAGAAAGGCCAACACATGCTTATATATGTTTACATGAGTA

upper sequence: GLYMA13G36140.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 2
-----ctgttgcgaagtattaaggtatcatgtagtcaatatttctgtatgatctttccgcttgtttgccaatctaaaccttttatgttcttttattttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAAGGACAACACATGCTTGTATATGTCTACATGAGTA
      |||| |    | |||  | |  ||||| | || | || |       | ||  | | | ||  |    ||   | ||    |  |||||||| ||||||||||   ||  |||||||||||||||||||||| || || |||||||| ||||||||||| ||||| || || || |||||| ||||||||||||||||||
catgaatgttcctgcctcttactgcaaaatgtaataaacacttttcc-----ccttatggtagctttgcttgttattacattaccctatttttatttgttctcagGTTCACTTACTGGGAAGGTTACATCATAGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctttccgcttgtttgccaatctaaaccttttatgttcttttattttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAAGGACAACACATGCTTGTATATGTCTACATGAGTA
                    atctaaa  putative branch site (score: 3)
                           ccttttatgttctttt  CT-rich tract
                       taaaccttttatgttc  TA-rich tract