Sequence
atgc intronic sequence ATGC exonic sequence...gttatggctcgtgcatagcatatgaagattgagaagatgttttatctggcaatgctttttctgtgtgtgtaaaccttgacctggttactagagcaacaagGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G35580.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 3
-------gttatggctcgtgca--tagcatatgaagattgagaagatgtttt-atctggcaatgctttttctgtgtgtgtaaaccttgacctggttactagagcaacaagGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGAC
| || | | || | | | | |||| | | | ||| | || | || | | ||| | | | ||| | || || |||| |||||||||||| ||| ||||| ||||||||||| || || || ||| | ||||||||| | || || || |||||| ||||||||||||||||||
gtatcctttgattatttgaccatctggtttctacctattgctatggtactttgagctccagaagcatatattgtatctcttaac-tagat---attcttagACCAACAAGGACATCACTGCCCAAATCATATCTGCTAGTATAGCGGGTGATATGGTTCTTGCTTCTGCCTACTCGCATGAGTTGCCACGATATGGTCTTG---------
upper sequence: GLYMA13G35580.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 3
------------------gttatggctcgtgcatagcatatgaagattgagaagatgttttatctggcaatgctt---tttctgtgtg-------tgtaaaccttgacctggttac--tagagcaacaagGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGAC
| || | | | | | | || | || || | | ||| | | ||| |||| ||| || | | |||| |||||||||||| |||||||| || |||||||| || || || ||| | ||||||||| | || || || |||||| ||||||||||||||||||
gtatcctttgattccttcatcatttgttttctttgttctttaatcatctggtttctgcttattactatggtacttgagctccagtggcataatattgtacctcttaactagacctccttagACCAACAAGGACATCACAGCACAAATCATCTCTGCTAGTATAGCAGGTGATATGGTTCTTGCTTCTGCTTACTCGCATGAGTTGCCACGATATGGTCTTG---------
upper sequence: GLYMA13G35580.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 3'ss of exon 3
----gttatggctcgtgcatagcatatgaagattgagaagatgttttatctggcaatgctttttctgtgtgtgt-----aaaccttgacctggttactagagcaacaagGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGAC
|||| | | |||| || | | ||||||| ||| || | ||| | ||||||| |||| ||||||||| |||||||| ||| |||| ||||||| ||| ||||||||||| || ||| |||| |||||| | |||||||| |||||||| || | ||||| ||||
ctgggttacttttttccctctttcaatgatgagctttgttgtttgttatctgccaagcattctgtgctgttgatctttgaaaccttaaccttgttactagACTAACAAGGATATTATTGCCCAAATAACATCCGCTAGCATTGCTGGTGATATAGTCCTTGCTTCTGCATATTCTCATGAGCTACCTCACTATGGACTTG---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193679937|gb|FK622009.1|FK622009EST: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTT GACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTgtatcctttt ... gagcaacaagGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggcaatgctttttctgtgtgtgtaaaccttgacctggttactagagcaacaagGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGAC
aaccttgac putative branch site
tttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatggctcgtgcatagcatatgaagattgagaagatgttttatctggcaatgctttttctgtgtgtgtaaaccttgacctggttactagagcaacaagGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - -ctcgtgc
- - - - - - - - -gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacctg