1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtatctgagaagtagtgctacttttttttttttttttctgtttgtgaccctatagattttatgaaagaaacactgttcaattttggtaggttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAACATTTTGTTTGTTCAGAATGTTCATCTGATGATGACATGAAGAAACCC
species | Glycine max |
transcript | GLYMA13G34740.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAEST: gi|193368742|gb|FK335710.1|FK335710
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAA-TTGGAEST: gi|214008997|gb|DB984557.1|DB984557
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACTATCCTGCTTGCGTCGGCATGACTATTGAAGAAGCAAAGAAATTGGAEST: gi|209709125|gb|BW658841.1|BW658841
genomic: CATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAEST: gi|193375728|gb|FK339153.1|FK339153
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAEST: gi|7029681|gb|AW459464.1|AW459464
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGAGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAEST: gi|9258286|gb|BE346433.1|BE346433
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATGACCCATATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAATAAGCAAAGAAATTGGAEST: gi|193379467|gb|FK343569.1|FK343569
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAEST: gi|209701039|gb|BW652617.1|BW652617
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAEST: gi|208024940|gb|GD822386.1|GD822386
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGAEST: gi|151394164|gb|EV264035.1|EV264035
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAEST: gi|193370284|gb|FK338134.1|FK338134
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGA
EST: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG GTACCATCCTGCTTAGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGG
genomic: CCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccag ... ttttttgtagGTACCATCCTGCTT-GCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGG
gaccctatagattttatgaaagaaacactgttcaattttggtaggttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAACATTTTGTTTGTTCAGAATGTTCATCTGATGATGACATGAAGAAACCC
ttttttgt CT-rich tract
tatagattttatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctgagaagtagtgctacttttttttttttttttctgtttgtgaccctatagattttatgaaagaaacactgttcaattttggtaggttttttgtagGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAACATTTTGTTTGTTCAGAATGTTCATCTGATGATGACATGAAGAAACCC
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