1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaatttgaaagaaaaaccatgcatgtgaatacatagtcagtcttttgctgcttttcttgagtatctaccaatgacaactttgttgctgaaatctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGC
species | Glycine max |
transcript | GLYMA13G34470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|14125194|gb|BG789632.1|BG789632
genomic: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|9898625|gb|BE607593.1|BE607593
genomic: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|19271158|gb|BM887414.1|BM887414
genomic: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
genomic: GATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
tgctgcttttcttgagtatctaccaatgacaactttgttgctgaaatctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGC
tctccac CT-rich tract
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttgaaagaaaaaccatgcatgtgaatacatagtcagtcttttgctgcttttcttgagtatctaccaatgacaactttgttgctgaaatctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGC
- - - - aagaaaa
- - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct