1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gattgaagattagtgccagaaacactgaaggaactacatctaagttttgtctatggtaatataaaaaaattatttttgaaacttgtcatttctgatacagATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG
species | Glycine max |
transcript | GLYMA13G33920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTCTGG ATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGEST: gi|17519618|gb|BM188660.1|BM188660
genomic: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGGgcaagtatac ... tctgatacagATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGG
EST: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGG NEST: gi|17519618|gb|BM188660.1|BM188660
genomic: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGGgcaagtatac ... tctgatacag-
EST: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGG NEST: gi|151397360|gb|EV267233.1|EV267233
genomic: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGGgcaagtatac ... tctgatacag-
EST: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGG ATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGEST: gi|10845804|gb|BF068846.1|BF068846
genomic: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGGgcaagtatac ... tctgatacagATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGG
EST: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGG ATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGEST: gi|192294635|gb|FG986484.1|FG986484
genomic: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGGgcaagtatac ... tctgatacagATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGG
EST: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGG ATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGG
genomic: AAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGGgcaagtatac ... tctgatacagATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGG
tttgtctatggtaatataaaaaaattatttttgaaacttgtcatttctgatacagATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG
ttctgat putative branch site (score: 3)
tcatttct CT-rich tract
taatataaaaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgaagattagtgccagaaacactgaaggaactacatctaagttttgtctatggtaatataaaaaaattatttttgaaacttgtcatttctgatacagATACACTCTTGGTGGTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - -ttagtgc
- - - - - - - - - - - cactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtca