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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtatggtggaatgcaattcttttttctttctagacatttctctttggaaaaatgttcctaactatgatgttctgcaacagCTGCTGCAGCTTGTCTCTGTGTTCAAGTGAAGGGAGCCTCTCCCAGCATGCCTGATAGGAAATCT

Basic information

species Glycine max
transcript GLYMA13G33850.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33850.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g47550.1 (Oryza sativa), 3'ss of exon 3
-----------------gtgtgtatggtggaatgcaattc-ttttttctttctagacatt--tctctttggaaaaatgttcctaactatgatgttctgcaacagCTGCTGCAGCTTGTCTCTGTGTTCAAGTGAAGGGAGCCTCTCCCAGCATGCCTGATAGGAAATCT-----------------------------------
                    |      | || |||||||  ||| || ||  |  |||||    |  || |    | | | | |  |   || ||      |||||||||| || | ||| ||||||||||| |||||||||   ||||||||||||||  | |||||                                    
gtactgaaagcaccctctcctcgtcatttgattgcaattgatttcttgttcttcaacattagcatactttgcttgaggcttcaatttccaatttttaatttcagCTGCTGCTGCATCTCTATGTGTTCAAGTAAAGGGAGCCATACCCAGCATGCCTGACCGAAAATCAGTAATGGACCTTCTGGAATCTGTTCAGGTTGAATA

upper sequence: GLYMA13G33850.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g00180.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgtatggtggaatgcaattc---ttttttctttctagacatttctctttggaaaaatgttcctaactatgatgttctgcaacagCTGCTGCAGCTTGTCTCTGTGTTCAAGTGAAGGGAGCCTCTCCCAGCATGCCTGATAGGAAATCT---------------------------
||  |  |    |  | |  | |   |||| ||  | || ||||  |   |    ||  |  ||  || |         |   |||||||||||||||| ||||||||||||||||||||| |||  ||| ||||||||||| ||    ||                            
gtaagattaactgtgtcctttcccagttttctccatgtacacatcccatataactaagtttctcacaattgcttgccatttgtacagCTGCTGCAGCTTCTCTCTGTGTTCAAGTGAAGGGGGCCATTCCAAGCATGCCTGACAGACGGTCAGTTTTGGATCTTCTACAGACCTGTTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctagacatttctctttggaaaaatgttcctaactatgatgttctgcaacagCTGCTGCAGCTTGTCTCTGTGTTCAAGTGAAGGGAGCCTCTCCCAGCATGCCTGATAGGAAATCT
                              tcctaac  putative branch site (score: 1)
                      aaaaatgtt  TA-rich tract