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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtatggcagaatgaaattcgttttctttatagagttttctctttggaaattggaaaattgtgtctgactactatgttctgcaacagCTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGCCTGATAGGAAATCTGTTTTGGATCTTCTTATTTGTCAATGAGAATACTC

Basic information

species Glycine max
transcript GLYMA13G33840.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33840.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g00180.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgtatggcagaatgaaattcgttttctttatagagttttctctttggaaatt--ggaaaatt--gtgtctgactactatgttctgca---acagCTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGCCTGATAGGAAATCTGTTTTGGATCTTCTTATTTGTCAATGAGAATACTC
         | |  || || |  ||  | ||   ||  || ||  | |  | ||     | || |  || ||| || | |   | |       ||||||||||| |||| ||| ||||||||||||||||| |||  ||| ||||||||||| ||    || ||||||||||||||          |||        
---------gtaagattaactgtgtcct-ttcccagttttctccatgtacacatcccatataactaagtttctcacaattgcttgccatttgtacagCTGCTGCAGCTTCTCTCTGTGTTCAAGTGAAGGGGGCCATTCCAAGCATGCCTGACAGACGGTCAGTTTTGGATCTTCTACAGACCTGTTGA--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22929480|gb|BU546619.1|BU546619
EST:     TGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTG                         CTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGC
genomic: TGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTGgtgtgtatgg ... tctgcaacagCTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGC
EST: gi|16279653|gb|BI943547.1|BI943547
EST:     TGTGGCCTTGGTTGAGGGCAAGTCCANAAAGGAATGCCTCAGATNTGCTG                         CTGCTGCGGCTTGTCTTTGTGTTCAAATGAAGGGAGCCTCTCCTAGCATGC
genomic: TGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTGgtgtgtatgg ... tctgcaacagCTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGC
EST: gi|254334364|gb|GR844149.1|GR844149
EST:     TGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTG                         CTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGC
genomic: TGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTGgtgtgtatgg ... tctgcaacagCTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGC
EST: gi|15813964|gb|BI786239.1|BI786239
EST:     TGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTG                         CTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGC
genomic: TGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGAATGCCTCAGATTTGCTGgtgtgtatgg ... tctgcaacagCTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttttctctttggaaattggaaaattgtgtctgactactatgttctgcaacagCTGCTGCGGCTTGTCTTTGTGTTCAAGTGAAGGGAGCCTCTCCTAGCATGCCTGATAGGAAATCTGTTTTGGATCTTCTTATTTGTCAATGAGAATACTC
                              gtctgac  putative branch site (score: 3)
                      aaaattgt  TA-rich tract