1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aactagtctggcatccaatcaaatacataacaattttgtacacctcagagctatcacttgttattgtcttatccattttgttttgaaatactgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCTCTAGAGTTTGCCC
species | Glycine max |
transcript | GLYMA13G31720.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|21285801|gb|BQ473672.1|BQ473672
genomic: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGgtaggcttcc ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|7029731|gb|AW459514.1|AW459514
genomic: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGgtaggcttcc ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|254347708|gb|GR853957.1|GR853957
genomic: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGgtaggcttcc ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|18039280|gb|BM307574.1|BM307574
genomic: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGgtaggcttcc ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGEST: gi|10234310|gb|BE803198.1|BE803198
genomic: GTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGgtaggcttcc ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
EST: GTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAG ATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
genomic: GTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGgtaggcttcc ... ctgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTG
cagagctatcacttgttattgtcttatccattttgttttgaaatactgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCTCTAGAGTTTGCCC
attttgttttgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactagtctggcatccaatcaaatacataacaattttgtacacctcagagctatcacttgttattgtcttatccattttgttttgaaatactgtctgcagATACTGGACACAAATCCCCAATTATTTTTCCATCTTCAACAGCAACGATTGATAGAACTCATCCGGAATGGAAAAGTAGAAGAAGCTCTAGAGTTTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - ccaatca
- - - - - - - - - - - - - - - - - - - - cacctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgt