1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgcatcatactttctggtattcataaatatctctgatttgtttgcttgatgcctgataaaagttcgtggcatgcatgcagATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATACTG
species | Glycine max |
transcript | GLYMA13G30060.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAAACTTTACATGTACCTAG ATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGEST: gi|193486814|gb|FK449205.1|FK449205
genomic: TAAAACTTTACATGTACC-AGgtatgcatca ... atgcatgcagATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAG
EST: ATGCTAATCAAAGAATGCCAATCATCTATGTAAAACTTTACATGTACCAG ATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAEST: gi|10231698|gb|BE800586.1|BE800586
genomic: ATGCTAATCAAAGAATGCCAATCATCTATGTAAAACTTTACATGTACCAGgtatgcatca ... atgcatgcagATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGA
EST: ATGCTAATCAAAGAATGCCAATCATCTATGTAAAACTTTACATGTACCAG ATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGA
genomic: ATGCTAATCAAAGAATGCCAATCATCTATGTAAAACTTTACATGTACCAGgtatgcatca ... atgcatgcagATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGA
aatatctctgatttgtttgcttgatgcctgataaaagttcgtggcatgcatgcagATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATACTG
gcctgat putative branch site (score: 4)
ataaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatcatactttctggtattcataaatatctctgatttgtttgcttgatgcctgataaaagttcgtggcatgcatgcagATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC