1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggtcaggagcccatgcatccaaattatcaagactgcaaccatcccagctaagctttgcaagagggagagcaccaagcaattccacaactccaaaatcaagTTCCCATTGGTCTTCCAGAAAGTTAGACCACCTACCAGGAAGCTGAAGACCACATACAAGGCCAAAAAGCCCAATTTGTTTATGTAATGTGGTTGATGAA
species | Glycine max |
transcript | GLYMA13G28830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTTCTTGCTATCAA-G-- TTCCCATTGGTCTTCCAGAAAGTTAGACCACCTACCAGGAAGCTGAAGACC
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAGTTCTTGCTATCAACGAGgtacaatatc ... caaaatcaagTTCCCATTGGTCTTCCAGAAAGTTAGACCACCTACCAGGAAGCTGAAGACC
agctaagctttgcaagagggagagcaccaagcaattccacaactccaaaatcaagTTCCCATTGGTCTTCCAGAAAGTTAGACCACCTACCAGGAAGCTGAAGACCACATACAAGGCCAAAAAGCCCAATTTGTTTATGTAATGTGGTTGATGAA
aaaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcaggagcccatgcatccaaattatcaagactgcaaccatcccagctaagctttgcaagagggagagcaccaagcaattccacaactccaaaatcaagTTCCCATTGGTCTTCCAGAAAGTTAGACCACCTACCAGGAAGCTGAAGACCACATACAAGGCCAAAAAGCCCAATTTGTTTATGTAATGTGGTTGATGAA
- - - - - ccatgca
- - - - - - - - - ccaaatt
- - - - - - - - - - - - - - - gactgca
- - - - - - - - - - - - - - - - - - - ccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaac