1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tataaaattgttttcactgagcaaaataagttggatttgtactgttaagctaatgcaactctagttcatcatgtttcgtttatttctggttatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATGTTATTCGCAACTCATGCCCTGGGGCTGGAGCCTGTGGTGGAATGTATA
species | Glycine max |
transcript | GLYMA13G27810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|193652196|gb|FK597788.1|FK597788
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|208073181|gb|GD869870.1|GD869870
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|208159300|gb|GD953831.1|GD953831
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|193489206|gb|FK457155.1|FK457155
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|208114414|gb|GD908945.1|GD908945
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|208184033|gb|GD981919.1|GD981919
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|208076499|gb|GD873930.1|GD873930
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|208123696|gb|GD922358.1|GD922358
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATEST: gi|207737749|gb|GD716437.1|GD716437
genomic: CCTGGTCATTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
EST: TTGGTTCTATTTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAG TGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
genomic: -TGG-TC-A-TTTTGAGGGTAACACGTTTGACATAGTGTCTGCCTTTCAGgtatgtgaaa ... tatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAAT
taagctaatgcaactctagttcatcatgtttcgtttatttctggttatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATGTTATTCGCAACTCATGCCCTGGGGCTGGAGCCTGTGGTGGAATGTATA
agctaat putative branch site (score: 3)
ttatcct putative PPT
tttatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaaattgttttcactgagcaaaataagttggatttgtactgttaagctaatgcaactctagttcatcatgtttcgtttatttctggttatcctgtagTGCTATGGAGAATATGTGAGTGGATCAATTAATGATGACCAAAGACAAAATGTTATTCGCAACTCATGCCCTGGGGCTGGAGCCTGTGGTGGAATGTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcatg