1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttttgaaataaaaagaggaaggggacatatggttttaagtttcactttcttatatgcaagaactaagaagtgctattattttttattattattgaaaagGATGGAGAAGATAGACATAAAGAAGGTGAGATGCATAGCAAAGATAGTGGGAACATTAGTCACAGTGGCAGGGGCAATGTTGATGACCTTATACAGAGGT
species | Glycine max |
transcript | GLYMA13G25890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCAACATGCTTCCAGCCATGACTTTTGTGATGGCAGTGTTTTGCCG GATGGAGAAGATAGACATAAAGAAGGTGAGATGCATAGCAAAGATAGTGGGEST: gi|151397034|gb|EV266907.1|EV266907
genomic: ATGAGCAACATGCTTCCAGCCATGACTTTTGTGATGGCAGTGTTTTGCCGgtaaattaat ... tattgaaaagGATGGAGAAGATAGACATAAAGAAGGTGAGATGCATAGCAAAGATAGTGGG
EST: ATGAGCAACATGCTTCCAGCCATGACTTTTGTGATGGCAGTGTTTTGCCG GATGGAGAAGATAGACATAAAGAAGGTGAGATGCATAGCAAAGATAGTGGG
genomic: ATGAGCAACATGCTTCCAGCCATGACTTTTGTGATGGCAGTGTTTTGCCGgtaaattaat ... tattgaaaagGATGGAGAAGATAGACATAAAGAAGGTGAGATGCATAGCAAAGATAGTGGG
ctttcttatatgcaagaactaagaagtgctattattttttattattattgaaaagGATGGAGAAGATAGACATAAAGAAGGTGAGATGCATAGCAAAGATAGTGGGAACATTAGTCACAGTGGCAGGGGCAATGTTGATGACCTTATACAGAGGT
taagaagtgctattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgaaataaaaagaggaaggggacatatggttttaagtttcactttcttatatgcaagaactaagaagtgctattattttttattattattgaaaagGATGGAGAAGATAGACATAAAGAAGGTGAGATGCATAGCAAAGATAGTGGGAACATTAGTCACAGTGGCAGGGGCAATGTTGATGACCTTATACAGAGGT
- - - aaataaa
- - - - - - - - - gaagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt