1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atataactggtttctctgctcttttttgctgttttgagtgtccttatcttttgacattggcaatcaatttttacaaaatcaattgtttttcaaatttcagGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG
species | Glycine max |
transcript | GLYMA13G25690.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAG GTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTEST: gi|18848688|gb|BM567807.1|BM567807
genomic: TCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAGgtattgctta ... caaatttcagGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGT
EST: TCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAG GTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTEST: gi|19053359|gb|BM732026.1|BM732026
genomic: TCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAGgtattgctta ... caaatttcagGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGT
EST: TCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAG GTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTEST: gi|16346940|gb|BI972535.1|BI972535
genomic: TCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAGgtattgctta ... caaatttcagGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGT
EST: TCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAG GTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGT
genomic: TCCTCAAGCTTAAGCAACTTACAGTTCTTACACTGGCTGAGACATATAAGgtattgctta ... caaatttcagGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGT
atcttttgacattggcaatcaatttttacaaaatcaattgtttttcaaatttcagGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG
ttttgac putative branch site (score: 3)
ttgtttttc putative PPT
aatcaatttttacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataactggtttctctgctcttttttgctgttttgagtgtccttatcttttgacattggcaatcaatttttacaaaatcaattgtttttcaaatttcagGTACTACCCTATGACCAACTGATGCAGGAGTTAGATGTGACAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - -actggtt
- - - - - - -ctctgct
- - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - -ttgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaatc