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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataactaacttgatgacattttcatgaataacactatttttttaattactatttcattgtcattttttaagcatatataatttatcacattcattaattatctatgcagATCTTAAGCCCGATGGACAAACCTTAATATCATCAACCAACAAGCCATTTACACATAATGCCACCGAACCAACGGCACTAAGGACGGCTGAAATTCCTGA

Basic information

species Glycine max
transcript GLYMA13G25570.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994582|gb|CF806278.1|CF806278
EST:     TGGTATATTCTTCTGTCAGATTGTTCATACTGGAAGGGCTTACGATCCAG                         ATCTTAAGCCCGATGGACAAACCTTAATATCATCAACCAACAAGCCATTTA
genomic: TGGTATATTCTTCTGTCAGATTGTTCATACTGGAAGGGCTTACGATCCAGgtatataact ... atctatgcagATCTTAAGCCCGATGGACAAACCTTAATATCATCAACCAACAAGCCATTTA
EST: gi|151401890|gb|EV271703.1|EV271703
EST:     TGGTATATTCTTCTGTCAGATTGTTCATACTGGAAGGGCTTACGATCCAG                         ATCTTAAGCCCGATGGACAAACCTTAATATCATCAACCAACAAGCCATTTA
genomic: TGGTATATTCTTCTGTCAGATTGTTCATACTGGAAGGGCTTACGATCCAGgtatataact ... atctatgcagATCTTAAGCCCGATGGACAAACCTTAATATCATCAACCAACAAGCCATTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtcattttttaagcatatataatttatcacattcattaattatctatgcagATCTTAAGCCCGATGGACAAACCTTAATATCATCAACCAACAAGCCATTTACACATAATGCCACCGAACCAACGGCACTAAGGACGGCTGAAATTCCTGA
                                     cattaat  putative branch site (score: 3)
       attttttaagcatata  TA-rich tract