1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgattgattatattacctgactttggatatgaatatctgtcaactgcaaatgcctgaaaattcacatgtatttttgtttctttttatttatcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
species | Glycine max |
transcript | GLYMA13G25460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGEST: gi|209704875|gb|BW661692.1|BW661692
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAAATGAGNAAAAGGGAACAG GAAGTGAGACGEST: gi|19452590|gb|BM954000.1|BM954000
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|298166217|gb|HO009188.1|HO009188
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|26049086|gb|CA785539.1|CA785539
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|192321114|gb|FK013560.1|FK013560
genomic: AGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|18725114|gb|BM523597.1|BM523597
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: GGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|213602689|gb|DB968915.1|DB968915
genomic: GGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|209707209|gb|BW656827.1|BW656827
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|14126115|gb|BG790553.1|BG790553
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|209729488|gb|BW651841.1|BW651841
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|192299791|gb|FG990057.1|FG990057
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|19937699|gb|BQ081388.1|BQ081388
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|7591513|gb|AW707244.1|AW707244
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGATAAAGGGAACAT GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGEST: gi|209705878|gb|BW675983.1|BW675983
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
EST: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
gcaaatgcctgaaaattcacatgtatttttgtttctttttatttatcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
tttttgtttcttttta CT-rich tract
aaaattcacatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgattatattacctgactttggatatgaatatctgtcaactgcaaatgcctgaaaattcacatgtatttttgtttctttttatttatcaaatccagGAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - -cctgact
- - - - - - - - - - - - - - - - - - - - caactgc
- - - - - - - - - - - - - - - - - - - - - - - - aatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcaca