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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgttgactatgtttttttcttttgttccacataagttttatttttattttctttttgttcagcatcagttttgattttaattaactatgcttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGACTTCCTAAACGTGCT

Basic information

species Glycine max
transcript GLYMA13G24360.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715702|gb|BW674363.1|BW674363
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|7326908|gb|AW620706.1|AW620706
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTCTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|15287940|gb|BI471831.1|BI471831
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|15664239|gb|BI701610.1|BI701610
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|26056377|gb|CA799291.1|CA799291
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGTTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|213594399|gb|DB973640.1|DB973640
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|22524479|gb|BU083290.1|BU083290
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|20076102|gb|BQ094885.1|BQ094885
EST:     ATTTTCAACATCCTTAATAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|207822426|gb|GD796559.1|GD796559
EST:     A-TTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|31561929|gb|CD487767.1|CD487767
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|10845918|gb|BF068938.1|BF068938
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|120530166|gb|EH258300.1|EH258300
EST:     ATTTTCAACATCCTTAACAAGAAGATCTTCAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|209725000|gb|BW659746.1|BW659746
EST:     ATTTTCAACACCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|22524883|gb|BU083694.1|BU083694
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|20449743|gb|BQ253867.1|BQ253867
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|209710025|gb|BW653532.1|BW653532
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCAT
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCAT
EST: gi|15338168|gb|BI498832.1|BI498832
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|9564410|gb|BE473919.1|BE473919
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|5760087|gb|AI965450.1|AI965450
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGC
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGC
EST: gi|8404364|gb|BE059998.1|BE059998
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|17964192|gb|BM270931.1|BM270931
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|13481992|gb|BG511335.1|BG511335
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|209707100|gb|BW683287.1|BW683287
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|23057815|gb|BU578270.1|BU578270
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|209721962|gb|BW669348.1|BW669348
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|7690833|gb|AW758970.1|AW758970
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|9819687|gb|BE555200.1|BE555200
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGA
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTAT-CCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGA
EST: gi|31560884|gb|CD486722.1|CD486722
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|20448949|gb|BQ253073.1|BQ253073
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|9900710|gb|BE609678.1|BE609678
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|23053059|gb|BU577550.1|BU577550
EST:     TTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: TTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|20449432|gb|BQ253556.1|BQ253556
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|213615016|gb|DB957054.1|DB957054
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
EST: gi|26048112|gb|CA784701.1|CA784701
EST:     ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA                         CTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG
genomic: ATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATAgtaagttata ... ttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttctttttgttcagcatcagttttgattttaattaactatgcttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGACTTCCTAAACGTGCT
                                 aattaac  putative branch site (score: 2)
                                          tgctttt  putative PPT
                       ttttgattttaattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgttgactatgtttttttcttttgttccacataagttttatttttattttctttttgttcagcatcagttttgattttaattaactatgcttttatgcagCTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCGTACTGTTTGGTGAGCTGGGCCGTGGGACTTCCTAAACGTGCT

- - - - - - - - - - - - - ccacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actatgc