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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcagagtaatcaacaccataatatcatggaaagtaaatatgtttgtcccttcaagattttaattgcctgaacttaagagaatttgatgttctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTCACCCCGCCTATGTCACCGCGGAAAGAATAAAGAAAGCGCAAAAATTGGA

Basic information

species Glycine max
transcript GLYMA13G23790.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523516|gb|BU082327.1|BU082327
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|5688024|gb|AI941039.1|AI941039
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|10233461|gb|BE802349.1|BE802349
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|27426313|gb|CA937833.1|CA937833
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|17401013|gb|BM177795.1|BM177795
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|17400846|gb|BM177628.1|BM177628
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|11688957|gb|BF596695.1|BF596695
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|254322348|gb|GR837762.1|GR837762
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|213589062|gb|DB973162.1|DB973162
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|7233269|gb|AW568617.1|AW568617
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|17023857|gb|BM094891.1|BM094891
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|17023301|gb|BM094335.1|BM094335
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
EST: gi|6916468|gb|AW397998.1|AW397998
EST:     ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTG                         AACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC
genomic: ACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCAGATTCTGgttagtatat ... tctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcccttcaagattttaattgcctgaacttaagagaatttgatgttctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTCACCCCGCCTATGTCACCGCGGAAAGAATAAAGAAAGCGCAAAAATTGGA
                                            ttctgct  CT-rich tract
     ttcaagattttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcagagtaatcaacaccataatatcatggaaagtaaatatgtttgtcccttcaagattttaattgcctgaacttaagagaatttgatgttctgctgcagAACTTGAGAAACACATTCCAGATGCCCATGTCATCATATCTACTCCATTTCACCCCGCCTATGTCACCGCGGAAAGAATAAAGAAAGCGCAAAAATTGGA

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