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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttcatatcaaatgacctagttatttctctctgtacctgtatgtggtcatttctgcttttaaaccagttgttttgatttattattccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT

Basic information

species Glycine max
transcript GLYMA13G23400.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g42380.1 (Oryza sativa), 3'ss of exon 3
acttcatatcaaatgacctagtt-atttctctctgtacctgtatgtggtcatttctgcttttaaaccagtt--gttttgatttattat-----tccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
        | |   | ||| |   || ||| |   | ||||  | | |   || ||   || |||| | ||  ||||     |||  |     | ||  |   | |||||||||| ||||||||||| ||||| |||||||| | ||| || ||  | || |||||| | |||||||||||||| |||||||||||||||||||| ||
-------tttactagtcctggaagatatctttagatgcctggttctaga-gttcctctgttaaaactacttaggtttctgcatatcctcagtttgctacttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCAT

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g37780.1 (Oryza sativa), 3'ss of exon 3
---act--tcatatcaaatgacctagttatttctctctgtacctgtatgtggtcatttctgcttttaaaccagttgttttgatttattattccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
   |||    || | || | | ||   |||| |   |   |  |  |||     ||||  | ||| |     |     |||||| | |     | ||   |  ||| || || ||||||||||||||||| |||||||| | |||||| ||| | ||| | ||| | ||||||||||| |||||||| ||||||||||| |||||
ttgactagcaatttaaattcatctgaatattacagacctgagataaatgctactattt--gttttaagtattgaacagttgattaactgcaattctt---tctagGGACATACATTGACAAGAAGTGCCCATTCACTGGAACTGTTTCTATCAGAGGCAGAATCATTGCTGGAACATGCCACAGTGCCAAGATGAACAGAACTAT

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g52354.1 (Oryza sativa), 3'ss of exon 3
---act--tcatatcaaatgacctagttatttctctctgtacctgtatgtggtcatttctgcttttaaaccagttgttttgatttattattccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
   |||    || | || | | ||   |||| |   |   |  |  |||     ||||  | ||| |     |     |||||| | |     | ||   | |||| || || ||||||||||||||||| |||||||| | |||||| ||| | ||| | ||| | ||||||||||| |||||||| ||||||||||| |||||
ttgactagcaatttaaattcatctgaatattacagacctgagataaatgctactattt--gttttaagtattgaacagttgattaactgcaattctt---tccagGGACATACATTGACAAGAAGTGCCCATTCACTGGAACTGTTTCTATCAGAGGCAGAATCATTGCTGGAACATGCCACAGTGCCAAGATGAACAGAACTAT

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 3
-acttcatatcaaatgacctagttatttctctctgtacctgtatgtggt-catttctgcttttaaac-cagttgttttgatttattattccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
   |   |  | | | |  ||  |    ||   |    || | | |  |    |  | |||| ||   | |     |||||| ||||    |  |   | |||| || || ||||| ||||||||||| |||||||| | |||||| ||| | ||| | ||| | ||||||||||| || |||||||||||||||||||||||
gtatgtttgactagtaatttaaatgcagctgaataatgctatttcttttatgctaattctttcaagtactgagcagttgattaattacaattcct---tgcagGGACATACATTGATAAGAAGTGCCCATTCACTGGAACTGTTTCTATCAGAGGCAGAATCATTGCTGGAACATGCCATAGTGCTAAGATGAACAGGACTAT

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G044800_T02 (Zea mays), 3'ss of exon 3
----acttcatatcaaatgacctagttatttc--tctctgtacctgtatgtggtcatttctgcttttaaaccagttgttttgatttattattccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
    |  | ||  ||| |    | |    |     |  || |  | |  ||| |  ||  ||| | |         | |     ||| ||||  ||| |   ||||| ||||| ||||||||||| ||||| |||||||| | |||||| ||| | ||| | ||  | ||||| ||||| |||||||||||||||||||| |||||
gaggatatgatcccaagtactatggcacatgaaaacattgcatttattagtgatatttcttgcatgtg--ttgacagatca---ttaatatttgttt-gcccacagGGACCTACATTGACAAGAAATGCCCATTCACTGGAACTGTTTCTATCAGAGGCAGAATTATTGCTGGGACATGCCACAGTGCTAAGATGAACAGAACTAT

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G086486_T01 (Zea mays), 3'ss of exon 5
acttcatatcaaatgacctagttatttctctctgtacctgtatgtggtcatt-tctgcttttaaaccagttgttttgattta-ttattccttt-tgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
      || |  ||  || | ||  |||   ||  |   |  ||| ||  || |   || |||   |||||| | |  ||   ||||| |||| |   | |||||||||| ||||| ||||| || || ||||| |||| ||| || ||| | || || ||| | ||||||||||| ||||||||||||||||| ||||| ||
-tactctagcctatc-ccaacttgcttcggactaaaaaggc-tgttgttgttgttctctgttagttcagttgatatatttcccttatttctttgttgttgcagGAACCTACATTGATAAGAAATGTCCATTCACCGGCACTGTGTCTATCAGGGGTCGCATCATCGCTGGAACATGCCACAGTGCTAAGATGAATAGGACCAT

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 3
acttcatatcaaatgacctagttatttctctctgtacctgtatgtggtcatttctgct-tttaaaccagttgttttgatttatta---ttccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
     |   |||||  || |||  | |  | |   |     |||     |||  || | |||    ||  ||||   |  |||||    ||  ||||  |||||| ||||| ||||||||||| || || |||||||| |  ||||| ||| | ||| | ||  | ||||||||||| |||||||||||||||||||| || ||
----gaccccaaattcccaagtactatggcacctgaaggcaatgcatctattagtgatgtttcttgcatgtgttaacaaatattaaatgtctgtttgcgtacagGGACCTACATTGACAAGAAATGTCCATTCACTGGAACCGTTTCTATCAGAGGCAGAATTATTGCTGGAACATGCCACAGTGCTAAGATGAACAGAACCAT

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0118g00680.t01 (Vitis vinifera), 3'ss of exon 3
acttcatatcaaatgacctagttatttctctctgtacctgtatgtggtcatttctgcttttaaaccagttgttttgatttattattcctt--ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
  || | | ||| | |   |  |||| ||   ||      || |   | | | |     | |     | ||  ||| |   ||  |  ||  |||   ||||| || |||||||| ||||| |||||||||||||||| |||||| ||  | ||||| ||||| ||||| || || || ||||| |||||||  ||||| ||
-gttgacaccaattcagaaaagtatt-ctaattggctagctaagctttaactgccttcatgagcgatgctgacttgttcccttcgttgttgtttggtaacagGTACTTATATTGATAAGAAATGCCCCTTCACTGGCACTGTTTCTATTAGGGGCCGCATCTTAGCTGGCACTTGCCATAGTGCCAAGATGATGAGGACCAT

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: EDO96718 (Chlamydomonas reinhardtii), 3'ss of exon 2
-----------------------------------acttcatatcaaatgacctagtta---tttctctctgtac-ctgtatgtggtcatttctg-cttttaaaccagttgttt--tgatttattattcctt-ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
                                   | |  |||     ||    ||  |   ||   |  ||  | | | | |  | ||   | | |  || |    |  ||    | |       | | |   ||  | ||||   ||| || |||||||||||||||||||| ||||| || |||||||||||||||||| |  | |                                  
gtgcgtcccggggagctttgcgctaaacgtaatggagtaaataaatcgtgtggcaggcagggttgtgccgtgggcgccgcacgccggcagcgccgacgattgagtgcgcggtccaataaccaggcgtgcttcactgcctgcagGCCACTACATCGACAAGAAGTGCCCCTTCACCGGCAACGTGTCCATCCGTGGCCGTATCCTCACGG----------------------------------

upper sequence: GLYMA13G23400.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S51_307V6.1 (Physcomitrella patens), 3'ss of exon 3
-acttcatatcaaatgacctagttatttctctctgtacctgtatgtggtcatttctgcttttaaaccagttgttttgatttattattccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
 | |    ||| | |  | |         | |   |  || |     |    |   | ||    ||    |  |||||   |     ||  |   ||  ||| || || || |||||||||||||||||||||||  ||||||| ||||| || || ||| |  | |||||     || |  |||| |||| | | || ||
tagtagccatcgagtttcgtgacctagggtttggatttctttgaaacggatgtctagtttcctcactccctaatttgaggaagggcacccctgctat-tagGTACATACATCGACAAGAAGTGCCCCTTCACTGGAGATGTTTCTATCCGAGGGCGCATCCTTACCGGAACTGTCAACTGCACTAAAATGACCCGTACGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207821470|gb|GD790171.1|GD790171
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAAGTAGCCCCTTCACTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAA-GT-GCCCCTTCACTG
EST: gi|207827618|gb|GD799581.1|GD799581
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207750039|gb|GD719189.1|GD719189
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207755233|gb|GD729828.1|GD729828
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCTTTCACTGGCAATGTTTCCATCCG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
EST: gi|193712674|gb|FK652315.1|FK652315
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAG
EST: gi|208088552|gb|GD887312.1|GD887312
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCA
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCA
EST: gi|208058482|gb|GD860599.1|GD860599
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATTATTTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCACCCG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTAT-ATT-GACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
EST: gi|208243127|gb|GE041929.1|GE041929
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         AAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208156902|gb|GD952046.1|GD952046
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTACATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193333075|gb|FK299925.1|FK299925
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207792547|gb|GD763795.1|GD763795
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCC
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCC
EST: gi|208216440|gb|GE012484.1|GE012484
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208336513|gb|GE139579.1|GE139579
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193637723|gb|FK583556.1|FK583556
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207763326|gb|GD736581.1|GD736581
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCAT
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCAT
EST: gi|208070307|gb|GD869738.1|GD869738
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCC
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCC
EST: gi|208042915|gb|GD841859.1|GD841859
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGA
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGA
EST: gi|193485379|gb|FK452491.1|FK452491
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCA
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCA
EST: gi|193430755|gb|FK392427.1|FK392427
EST:     TGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGGAAG                         GAACCTATATTGACAA
genomic: TGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCG-AAGgtatctctct ... ttgaatacagGAACCTATATTGACAA
EST: gi|207711162|gb|GD694451.1|GD694451
EST:     TGGAAGTCCATTGGGCTTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TGGAAGTCCATTGGGCTT-GGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207788121|gb|GD759749.1|GD759749
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207707139|gb|GD687631.1|GD687631
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193460945|gb|FK425810.1|FK425810
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208038921|gb|GD832819.1|GD832819
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207784504|gb|GD757681.1|GD757681
EST:     TTGGAGGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCC
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCC
EST: gi|208078161|gb|GD877891.1|GD877891
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193539925|gb|FK496935.1|FK496935
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTNACTGGCAATGTTTCCATCC
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCC
EST: gi|207713345|gb|GD696742.1|GD696742
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208209435|gb|GE008199.1|GE008199
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207780616|gb|GD751767.1|GD751767
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193667536|gb|FK613554.1|FK613554
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193477734|gb|FK440489.1|FK440489
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTT
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTT
EST: gi|208140093|gb|GD938985.1|GD938985
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207839451|gb|GD813018.1|GD813018
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTNACTGGCAATGTTTCCATCC
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCC
EST: gi|193458116|gb|FK423240.1|FK423240
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193347267|gb|FK313041.1|FK313041
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGACAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207792939|gb|GD765139.1|GD765139
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATCGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208178499|gb|GD977808.1|GD977808
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208186860|gb|GD983560.1|GD983560
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207841871|gb|GD816303.1|GD816303
EST:     TGGAAGTACCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
genomic: TGGAAGT-CCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
EST: gi|193555214|gb|FK512187.1|FK512187
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207698858|gb|GD680691.1|GD680691
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCA
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCA
EST: gi|208327061|gb|GE122339.1|GE122339
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208331726|gb|GE131851.1|GE131851
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208288962|gb|GE085367.1|GE085367
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
EST: gi|193343152|gb|FK305746.1|FK305746
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTT
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTT
EST: gi|193495585|gb|FK462841.1|FK462841
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207752914|gb|GD722246.1|GD722246
EST:     TGGAAGTCCAATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TGGAAGTCC-ATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|254329635|gb|GR839188.1|GR839188
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193548751|gb|FK508292.1|FK508292
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAG
EST: gi|207773026|gb|GD744934.1|GD744934
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGA
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGA
EST: gi|208280794|gb|GE076722.1|GE076722
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208066025|gb|GD865222.1|GD865222
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193492038|gb|FK453454.1|FK453454
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
EST: gi|207842315|gb|GD814601.1|GD814601
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208024921|gb|GD826595.1|GD826595
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208110239|gb|GD904947.1|GD904947
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208173169|gb|GD970682.1|GD970682
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|207767254|gb|GD739666.1|GD739666
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGA
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGA
EST: gi|208119387|gb|GD915136.1|GD915136
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|208284789|gb|GE085603.1|GE085603
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193473863|gb|FK443206.1|FK443206
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTG
EST: gi|207834644|gb|GD805495.1|GD805495
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCG
EST: gi|193646194|gb|FK592597.1|FK592597
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTG
EST: gi|193386579|gb|FK353257.1|FK353257
EST:     TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAG                         GAACCTATATTGACAAGAAGTGCCCCTTNACTG-CAATGTTT
genomic: TTGGAAGTCCATTGGGCTTGGATTTAAGACTCCCAGGGAAGCCATCGAAGgtatctctct ... ttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtcatttctgcttttaaaccagttgttttgatttattattccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT
                          ttttgat  putative branch site (score: 4)
                                tttattattcctttt  CT-rich tract
                          ttttgatttattattc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acttcatatcaaatgacctagttatttctctctgtacctgtatgtggtcatttctgcttttaaaccagttgttttgatttattattccttttgaatacagGAACCTATATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGTGGCCGTATCTTGGCTGGAACATGTCACAGTGCTAAGATGAACAGGACTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG