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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatattgttctatccatttcttgggtcttaatatttatggttcattggtttgtgattaacttgagtctgtggattataattctcagATAGCACTTGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATCCGGCGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCG

Basic information

species Glycine max
transcript GLYMA13G21320.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21320.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g04220.t01 (Vitis vinifera), 3'ss of exon 3
gtaacaatattgttctatccatttcttgggtcttaatatttatggttcattggt--ttgtgattaa--cttgagtctgtggattataattctcagATAGCACTTGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATCCGGCGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCG
||||    ||  | ||  | | | ||   |   |  | || ||  | ||| |||  |  ||  |||   || | | ||  ||||   || ||||||| ||  | ||||| |  |||||||| || ||||| || ||||||||||| || ||||||||||| |||||||| ||||||||| ||||||| || || |
gtaagctgatcatccttgctactactaaagaaattctcttaattatgcatgggtgctaatgtctaaacttttaatatgctgatt---atcctcagATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttatggttcattggtttgtgattaacttgagtctgtggattataattctcagATAGCACTTGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATCCGGCGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCG
                      gattaac  putative branch site (score: 2)
                                                ttctc  putative PPT
                                         attataattct  TA-rich tract