Sequence
atgc intronic sequence ATGC exonic sequencegtaactgaaaatgctttcactagaatttgaatttctgttttggaaggaaaatttatcaatttattcctatgtgtattattgtagTTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCT
Basic information
species | Glycine max |
transcript | GLYMA13G20240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G20240.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaactgaaaatgctttcactagaatttgaatttctgttttggaaggaaaatt---tatcaatttattcctatg-tgtattattgtagTTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCT-----------
|||| || | | || || | || |||| | || |||| || | ||||||| | || || ||||||||||| ||| | || ||||| ||||| || || |||||||||||||| ||||||||| | || |||||||| |||||||||||||||
gtaatgttcaactttgagattaagtttgttacttatgttcttgatggaactttgtcttgttgtttattcgtttggtgaattattgtagTCTACACCGTATCACTAAGACAGCAGTTGCAGGATGTTGGTAAGAAGCTTGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAG
upper sequence: GLYMA13G20240.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 3
gtaactgaaaatgctttcactagaatttgaatttctgttttggaagg--aaaatttatcaatttattccta---tgtgtattattgtagTTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCT-----------
|||| | ||| | |||| | ||| ||||||||| | | | || |||| | || | | ||| || || |||| |||||||||||| |||| || ||||||| ||| |||| || ||||||||||||||||||||||| ||||||||||||| |
gtaaaaaatttcacttgattttgaatcaaatttttgtttttggaagtttacactccatgaattgactcgttgtctttgtgtttttatagTCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttctgttttggaaggaaaatttatcaatttattcctatgtgtattattgtagTTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCT
aaaatttatcaattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactgaaaatgctttcactagaatttgaatttctgttttggaaggaaaatttatcaatttattcctatgtgtattattgtagTTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG