1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catatcatgttgttcctgtgaccttaaattgttatgatttttattgcctctattgagaaattagacttgaatacttgtgaaatattgctgaatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATG
species | Glycine max |
transcript | GLYMA13G19500.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|12489759|gb|BG043280.1|BG043280
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATANGGAAAGGAAGCAAGGTGAAATATTGAACTTGACAAA-GEST: gi|26269126|gb|CA820189.1|CA820189
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATAT-GAACTTGACAAAAG
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|192330021|gb|FK020837.1|FK020837
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|13479768|gb|BG509111.1|BG509111
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|19346407|gb|BM891287.1|BM891287
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|37996937|gb|CF808526.1|CF808526
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|298181507|gb|HO022946.1|HO022946
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|298169347|gb|HO020707.1|HO020707
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|6133848|gb|AW132241.1|AW132241
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCCGAAGCT-CAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|9565429|gb|BE474938.1|BE474938
genomic: GA-CCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|7587913|gb|AW703719.1|AW703719
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGANCAAA-GEST: gi|8403914|gb|BE059548.1|BE059548
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGA-CAAAAG
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|192324146|gb|FK017877.1|FK017877
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|213593665|gb|DB971687.1|DB971687
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|209719745|gb|BW672120.1|BW672120
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|298178505|gb|HO024240.1|HO024240
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGC GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|209701982|gb|BW664582.1|BW664582
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAEST: gi|17154018|gb|BM143951.1|BM143951
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
EST: GACCCGAAGCTCCAAAGATCTTCAACTGT GTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
genomic: GACCCGAAGCTCCAAAGATCTTCAACTGTgtaagcatat ... aatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGA
gcctctattgagaaattagacttgaatacttgtgaaatattgctgaatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATG
tgaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatcatgttgttcctgtgaccttaaattgttatgatttttattgcctctattgagaaattagacttgaatacttgtgaaatattgctgaatcttgcagGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC