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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttacgttttgctgattttgtgtttggtttgcacttcacgtgattgagttgaatttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACT

Basic information

species Glycine max
transcript GLYMA13G19450.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19450.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------gttcgttacgtt--ttgctgattttgtgtttggt-ttgca-cttcacgtgattga--gttgaatttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACT
                            |   ||  |||  |   ||    |    ||| | || || ||||      |||   ||| |  |  | |||||| | ||||| |||||||||||||| ||||| || ||| ||||||||||||   | |||||||| || || || 
attcaataatttggtgaatgggatcatatcttttcggttaatgattggaaataacattgatgttacaacttctaacccttgcctgttcatctattctcagGAGCATTTACTACAAATGTGGTTGCAGCTGCGCCAGTGGTATACTGCAAAAATGCATTGGATATGTCAAAAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727148|gb|BW655213.1|BW655213
EST:     AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAG                         GATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
genomic: AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGgttcgttacg ... tttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
EST: gi|120530228|gb|EH258362.1|EH258362
EST:     AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAG                         GATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
genomic: AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGgttcgttacg ... tttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
EST: gi|192294186|gb|FG986275.1|FG986275
EST:     AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAG                         GATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
genomic: AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGgttcgttacg ... tttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
EST: gi|213601471|gb|DB956735.1|DB956735
EST:     AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAG                         GATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
genomic: AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGgttcgttacg ... tttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
EST: gi|209725373|gb|BW658260.1|BW658260
EST:     AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAG                         GATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
genomic: AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGgttcgttacg ... tttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
EST: gi|209727793|gb|BW658717.1|BW658717
EST:     AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAG                         GATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA
genomic: AAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGgttcgttacg ... tttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgattttgtgtttggtttgcacttcacgtgattgagttgaatttctttcagGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACT
 tgctgat  putative branch site (score: 3)
                                             tttctttc  putative PPT
                                           aatttcttt  TA-rich tract