1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTGAAAGTG
species | Glycine max |
transcript | GLYMA13G19280.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTNTGATGCTCACTCAGGAGGAGEST: gi|193605786|gb|FK556036.1|FK556036
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAG
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGEST: gi|207831391|gb|GD801655.1|GD801655
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTG
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|6482368|gb|AW201633.1|AW201633
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAA-GGACCATGCTAGAEST: gi|207835918|gb|GD807357.1|GD807357
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|27424837|gb|CA936357.1|CA936357
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|15664004|gb|BI701375.1|BI701375
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|193402495|gb|FK365571.1|FK365571
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: GATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|254325091|gb|GR834516.1|GR834516
genomic: GATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|10709031|gb|BF008692.1|BF008692
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|193451188|gb|FK420114.1|FK420114
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTNTGATGCTCACTCAGGAGGAGAACGTGEST: gi|208139746|gb|GD939408.1|GD939408
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTG
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|58017107|gb|CX703849.1|CX703849
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|193692734|gb|FK632865.1|FK632865
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|208044678|gb|GD840654.1|GD840654
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: CTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTAACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGEST: gi|13791396|gb|BG653987.1|BG653987
genomic: CTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGT-ACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAG
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAEST: gi|207799473|gb|GD769242.1|GD769242
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAA
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGTCTAGEST: gi|207827660|gb|GD800813.1|GD800813
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATG-CTAG
EST: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAEST: gi|6846539|gb|AW348829.1|AW348829
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
EST: TCTCCTNCTANTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAG GTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
genomic: TCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAAAGgtaattttaa ... gtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGA
ctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTGAAAGTG
tactaat putative branch site (score: 1)
ttactaataaatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttaacctccaactttagtattcatgaaggtagggtggggttggaagagtgatgtcttgtatcactctatgagctcttaggattcttttcctacattcatgagcttactaataaatatgtatttacagGTATGATGCTCACTCAGGAGGAGAACGTGAAATTCAAAGGACCATGCTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTGAAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG