1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cattttttagctttcctttgtatgatttaacactggttacgaggatatttgtttctcagctttgatattcatctatcttgctctttcaaattgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTG
species | Glycine max |
transcript | GLYMA13G18910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCEST: gi|120496708|gb|EH224875.1|EH224875
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCEST: gi|31472658|gb|CD414686.1|CD414686
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCEST: gi|120497047|gb|EH225214.1|EH225214
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCEST: gi|120496702|gb|EH224869.1|EH224869
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCEST: gi|120496941|gb|EH225108.1|EH225108
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCEST: gi|10233749|gb|BE802637.1|BE802637
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCEST: gi|120497054|gb|EH225221.1|EH225221
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCEST: gi|8827527|gb|BE211257.1|BE211257
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
EST: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGG GATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
genomic: TATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGgtaagtaatt ... ttgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGC
tatttgtttctcagctttgatattcatctatcttgctctttcaaattgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTG
ctttgat putative branch site (score: 5)
tttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttttagctttcctttgtatgatttaacactggttacgaggatatttgtttctcagctttgatattcatctatcttgctctttcaaattgcaatcagGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - -gctttcc
- - - - - - - - - tgtatga
- - - - - - - - - - - - - - - -actggtt