1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtatcctgtaaagatgttaacagtgtgcagttttgtgctggtttaatatcttttactttatcaactatattgaagttttgaagagcataattgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATG
species | Glycine max |
transcript | GLYMA13G18170.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|214004977|gb|DB989110.1|DB989110
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|9564054|gb|BE473563.1|BE473563
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|151406209|gb|EV276024.1|EV276024
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|151404411|gb|EV274221.1|EV274221
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|7285126|gb|AW597613.1|AW597613
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|12497074|gb|BG047384.1|BG047384
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|213598058|gb|DB972246.1|DB972246
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|254320598|gb|GR827047.1|GR827047
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|193704210|gb|FK647054.1|FK647054
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|192326348|gb|FK017665.1|FK017665
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATEST: gi|151398913|gb|EV268784.1|EV268784
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
EST: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGA TTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
genomic: ATGAACAAGCATTGGATGGATTGCAAGATAGAGTTAATCTGCTGAAAAGAgtaagcttac ... attgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGAT
aatatcttttactttatcaactatattgaagttttgaagagcataattgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATG
gtttaat putative branch site (score: 4)
ttttactttatcaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatcctgtaaagatgttaacagtgtgcagttttgtgctggtttaatatcttttactttatcaactatattgaagttttgaagagcataattgcaacagTTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - tcctgta
- - - - - - - - - - - -gtgtgca
- - - - - - - - - - - - - - - - - - tgctggt