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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgcatgctttcttgaatctgatcaataaggtgttcaaccagtccttatggcatttcttcatgctaactaggtcacttactatgtgtaactattgttaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTCCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG

Basic information

species Glycine max
transcript GLYMA13G17610.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 3'ss of exon 2
gtacgtgcatgctttcttgaatctgatcaataaggtgttcaaccagtccttatggcatttcttcatgctaactaggtcacttactatgtgtaactattgttaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTCCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
         | | | ||  ||| |  | || || || ||       |  || | ||     || |     | |   | | | ||  |||   | | |   | |  |||||||||||||| ||||||||| | || || || ||||| ||||||||||||||||||  |||  | ||||| ||||| || |||||||| ||| ||||||
-----cttttacatgctacaat-tattgaaaaatgtcttttcttttttttttttgcgggaattgaaatgtattttctgattgacc-tgttccattttcaattac-cagAAACTTATTGCTTATGACCATCTAGAAGGCGACCCTGGTTTAGAGGGTGGTAAAAATTCCCCTCTATTTACTGACATCCTGAACATGGTCTGCGGTTGTG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G167318_T01 (Zea mays), 3'ss of exon 2
gtacgtgcatgctttcttgaatctgatcaataaggtgttcaaccagtccttatggcatttcttcatgctaactaggtcacttactatgtgtaactattgttaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTCCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
 |     |||  |||  |       |   | ||  |    ||  ||     ||| ||  ||||||  | | | |      ||     ||  || |  |||||   |||||||||||||| ||||||||||| || || |||||||| ||||| ||||||||||||  |||| | ||||||||||| || |||||||| ||  |||| |
atcttaccatttttttcttgtataaaaatacaaaatacaaaattag-----atgacacatcttca-acaatccattctgattgagtcgttcaatttctgttac--cagAAACTTATTGCTTATGACCATTTAGAAGGCGATCCTGGTTTAGAAGGTGGTAAAAATTCCCCAATATTTACAGACATCCTGAACATGGTATGTGGTTGCG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G335287_T01 (Zea mays), 3'ss of exon 2
-gtacgtgcatgctttcttgaatctgatcaataaggtgttcaaccagtccttatggcatttcttcatgctaactaggtcacttactatgtgtaactattgttaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTCCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
  ||  |  || |   |||   | || |  ||||      |  | |      ||| ||  || |||  | | | |      ||    |||  || |  |||||   |||||||||||||| ||||||||||| || || |||||||| ||||| |||||||||||   |||| | |||||||||||  | |||||||| ||  |||| |
aatatatctataccgccttt--tttgttttataaaa----ccgcaatattagatgacacatcatca-acaatccattctgattgagttgttcaatttctgttac--cagAAACTTATTGCTTATGACCATTTAGAAGGCGATCCTGGTTTAGAAGGTGGTAAAAACTCCCCAATATTTACAGACATCTTGAACATGGTATGTGGTTGCG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 4
gtacgtgcatgctt-tcttgaatctgatcaataaggtgttcaaccagtccttatggcatttcttcatgctaactaggtcacttactatgtgtaactattgttaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTCCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
  | || |||   | || ||||| || ||  | |  | |  ||    | | | ||| |       |     | ||  | | ||| | | | ||| |    | | |||||||||| || || ||||| ||||| ||||| ||||||||  |||| ||||||| |||||  ||  |||||||||||||||| || ||||||||||||||||
-aatgtccatctatgtcgtgaatatgttct-tgaaatttataatgcatgcatgtggtag------acaaggattat-taatttattctatttaattccaataagtacagAAACTCATCGCATATGAGCATTTAGAGGGTGATCCTGGTCTAGATGGTGGTACAAATGCACCGCTGTTTACAGACATTCTGAATATGGTTTGCAGTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcatttcttcatgctaactaggtcacttactatgtgtaactattgttaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTCCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
                                     taactattgttaata  TA-rich tract