1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctgatctgggaagaatgtttattactagagggaaaaataaattatttttaattattaatttcattcactgatgcttataaccttctttctaatatgcagCTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCC
species | Glycine max |
transcript | GLYMA13G15140.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTCCTATGCATCACACAAGGCTGTCGATGAATTTAAAGAGGCCAAAGTT CTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTGEST: gi|207759217|gb|GD731728.1|GD731728
genomic: TCTCCTATGCATCACACAAGGCTGTCGATGAATTTAAAGAGGCCAAAGTTgtaagttcaa ... taatatgcagCTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTG
EST: TCTCCTATGCATCACACAAGGCTGTCGATGAATTTAAAGAGGCCAAAGTT CTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTG
genomic: TCTCCTATGCATCACACAAGGCTGTCGATGAATTTAAAGAGGCCAAAGTTgtaagttcaa ... taatatgcagCTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTG
tttttaattattaatttcattcactgatgcttataaccttctttctaatatgcagCTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCC
ttctaat putative branch site (score: 2)
ccttctttct CT-rich tract
aattattaatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgatctgggaagaatgtttattactagagggaaaaataaattatttttaattattaatttcattcactgatgcttataaccttctttctaatatgcagCTGGGAGTTAATACTGTACCTGTGCTTGTGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT