1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaaatggctgaaatattaatggagttattgattgtttatcctttattttttgctatattacttagtgttgttgatatttagattcttgagatgcactagGTTGTGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAG
species | Glycine max |
transcript | GLYMA13G10340.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCATTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAG GTTGTGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGC--ATAEST: gi|22932678|gb|BU549817.1|BU549817
genomic: ATGCTGCATTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAGgtaattttat ... gatgcactagGTTGTGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATA
EST: ATGCTGCATTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAG GTTGTGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATA
genomic: ATGCTGCATTGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAGgtaattttat ... gatgcactagGTTGTGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATA
attttttgctatattacttagtgttgttgatatttagattcttgagatgcactagGTTGTGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAG
tgttgat putative branch site (score: 4)
ttgatatttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaatggctgaaatattaatggagttattgattgtttatcctttattttttgctatattacttagtgttgttgatatttagattcttgagatgcactagGTTGTGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - -tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg