1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agaaggaaaaaattcaaatgggttgattccctactagtaaagttttgaattttcatgatgggtctaatttttttttttctgttgactttactgtttacagGTATGGTTTGCCATTTGTGTCCCCAAACAACTTACTTGTGACAATTATCAATGGCACAGGAGCAGGAATTGAAATCATATACGTCTTTATATTCATCTAC
species | Glycine max |
transcript | GLYMA13G09140.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGGGGTTCCTTACCCTATGACACTTCTCAATTGTCTCCTTTCTGCTTG GTATGGTTTGCCATTTGTGTCCCCAAACAACTTACTTGTGACAATTATCAA
genomic: TCGGGGGTTCCTTACCCTATGACACTTCTCAATTGTCTCCTTTCTGCTTGgtaagttact ... ctgtttacagGTATGGTTTGCCATTTGTGTCCCCAAACAACTTACTTGTGACAATTATCAA
tgaattttcatgatgggtctaatttttttttttctgttgactttactgtttacagGTATGGTTTGCCATTTGTGTCCCCAAACAACTTACTTGTGACAATTATCAATGGCACAGGAGCAGGAATTGAAATCATATACGTCTTTATATTCATCTAC
tgttgac putative branch site (score: 3)
ctttact CT-rich tract
tctaattttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaggaaaaaattcaaatgggttgattccctactagtaaagttttgaattttcatgatgggtctaatttttttttttctgttgactttactgtttacagGTATGGTTTGCCATTTGTGTCCCCAAACAACTTACTTGTGACAATTATCAATGGCACAGGAGCAGGAATTGAAATCATATACGTCTTTATATTCATCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - aaaaaat
- - - - - - - - - tgggttg
- - - - - - - - - - - - - - ccctact
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgatg