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gtaagattttctactacatcacttgcacgggagaaatatagttctataatctcagtgattgcactcctgttcatctgttatgcagttttggtaatatactttaataaattttaaaattccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAATCTCTTGAAGCATCCAAATTTTTTGACAGATGCCAAATTGGCTATAA
species | Glycine max |
transcript | GLYMA13G08090.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTGGAATATTTGATG GTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAEST: gi|120531892|gb|EH260025.1|EH260025
genomic: TTTGGAATATTTGATGgtaagatttt ... ttccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATA
EST: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATG GTCATGGTGGTTCTCGTGCTGCTGAGTAEST: gi|7640592|gb|AW734820.1|AW734820
genomic: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGgtaagatttt ... ttccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTA
EST: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATG GTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATEST: gi|298196173|gb|HO044564.1|HO044564
genomic: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGgtaagatttt ... ttccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCAT
EST: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATG GTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAEST: gi|254313836|gb|GR831465.1|GR831465
genomic: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGgtaagatttt ... ttccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATA
EST: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATG GTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAEST: gi|209700604|gb|BW670420.1|BW670420
genomic: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGgtaagatttt ... ttccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATA
EST: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATG GTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAEST: gi|151411248|gb|EV281059.1|EV281059
genomic: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGgtaagatttt ... ttccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATA
EST: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATG GTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATA
genomic: GACATTGAAGATTGGTGGCCAATCAATATGCTTATTTGGAATATTTGATGgtaagatttt ... ttccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATA
catctgttatgcagttttggtaatatactttaataaattttaaaattccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAATCTCTTGAAGCATCCAAATTTTTTGACAGATGCCAAATTGGCTATAA
ctttaat putative branch site (score: 4)
ttttggtaatatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattttctactacatcacttgcacgggagaaatatagttctataatctcagtgattgcactcctgttcatctgttatgcagttttggtaatatactttaataaattttaaaattccatacagGTCATGGTGGTTCTCGTGCTGCTGAGTATTTAAAGGAGCATCTTTTTGATAATCTCTTGAAGCATCCAAATTTTTTGACAGATGCCAAATTGGCTATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG