1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataattcaagcctcaaggcaataatggaattgtgcacatgatgttattcgagttcaagttatgaaactatgatgtttagttaaatggtttatatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATGATGCAAACATGGGGTGCAAAGGTACACCCATCTCCATCTATGATTACTG
species | Glycine max |
transcript | GLYMA13G07130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAG GTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATGEST: gi|151406911|gb|EV276726.1|EV276726
genomic: GGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccct ... atatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
EST: GGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAG GTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATGEST: gi|209702929|gb|BW667451.1|BW667451
genomic: GGGGAAGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccct ... atatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
EST: AGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAG GTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
genomic: AGTGCATTGGCCTTTGCGTGCAGCATATTTGGTCTTGGCTGTGAGgtattgccct ... atatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATG
attcgagttcaagttatgaaactatgatgtttagttaaatggtttatatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATGATGCAAACATGGGGTGCAAAGGTACACCCATCTCCATCTATGATTACTG
atgtttagttaaatgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattcaagcctcaaggcaataatggaattgtgcacatgatgttattcgagttcaagttatgaaactatgatgtttagttaaatggtttatatatatagGTGTGGCAAGTACGTGCTTCTTATGATTCAAAACCATATCGGAGATTGATGATGCAAACATGGGGTGCAAAGGTACACCCATCTCCATCTATGATTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - ttcaagc
- - - - - - -caaggca
- - - - - - - - - - - - - - - - tgcacat
- - - - - - - - - - - - - - - - - - - tgatgtt