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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggactaaaacttacattttgcttgtataggtattaaaacctaatatggagataacctttatactgctacgccatttccttaatttctttcttttgcacagGGTGTGATGATGACACATGGCAATGTCTTAGCTACACTCTCTGCTGTGATGACCATTGTTCCTGACATTGGGACAAAGGATATATATCTTGCATACTTAC

Basic information

species Glycine max
transcript GLYMA13G03280.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------------------ggactaaaacttacattttgcttgtataggtattaaaacctaatatggagataacctttat-actgctacgccatttccttaattt--ctttctt----------ttgcacagGGTGTGATGATGACACATGGCAATGTCTTAGCTACACTCTCTGCTGTGATGACCATTGTTCCTGACATTGGGACAAAGGATATATATCTTGCATACTTAC
                                        |    | ||   | || |||  |  || | ||| ||||          || ||    ||||   | || |   |||| |||||| |  |||||            |     ||||||| |||||||| ||||| |||||| |||||||| | || || |||||||| |||||||||||| |||| |  | |||||||||  | ||||| ||||
gttagaaagttttcgaaaccagttgacgtgtacaactgttgtctcagaataaaaatcttgtct--atggttatcaaaattgttctatcagctatttgttattggtcctgcaaaatttacttaatctgactttcccacttcccaaataatgtagGGTGTTATGATGACGCATGGTAATGTCCTAGCTACAGTTTCGGCAGTGATGACAATTGTTCCTGACCTTGGAAAGAGGGATATATACATGGCATATTTAC

upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 5
ggactaaaacttacattttgcttgta---taggtattaaaacctaatatggagataacctttatactgctacgccatttccttaatttctttc-ttttgcacagGGTGTGATGATGACACATGGCAATGTCTTAGCTACACTCTCTGCTGTGATGACCATTGTTCCTGACATTGGGA---CAAAGGATATATATCTTGCATACTTAC
    | ||  | |  |||   || ||   | | || |||| ||| ||     ||| |  |||    |     |  | | |  | ||   |  |  ||    ||||||||||||||||| ||||| |||||| |||| ||| | |||||||| ||||| |||||||||| | |||| |      ||||| | ||| | |||||     
atgttcaatttcatttttcctttttaagatggttagtaaatcctgatt----gatgattttttctttttggtgttaatccacttatcattgccacttcatccagGGTGTGATGATGACTCATGGAAATGTCCTAGCCACAGTTTCTGCTGTCATGACAATTGTTCCTGGCCTTGGAAAGGTGGAGGATGTTTATTTAGCATATC---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggagataacctttatactgctacgccatttccttaatttctttcttttgcacagGGTGTGATGATGACACATGGCAATGTCTTAGCTACACTCTCTGCTGTGATGACCATTGTTCCTGACATTGGGACAAAGGATATATATCTTGCATACTTAC
                         ccatttccttaatttc  CT-rich tract
                                 ttaatttctttctttt  TA-rich tract