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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtctttcatcatttatttatttccttttggtttgtttctattaatatttctgtgcttgttattatttaatctgttgtggtgtgggtgtagATATGGTGATGGTGAGCCAACTGATAATGCAGCGAGATTTTATAAATGGTTTACGGAG

Basic information

species Glycine max
transcript GLYMA13G00990.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00990.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtgtctttcatcatttatttatttccttttggttt--gtttcta--ttaat--atttctgtgcttgttattatttaatctgttgtggtgtgggtgtagATATGGTGATGGTGAGCCAACTGATAATGCAGCGAGATTTTATAAATGGTTTACGGAG
|| ||| |  ||      |  ||| |||    | ||| |  || |  |  || ||   ||  ||||  ||   |  ||| |     ||   | ||| ||||||||||| ||||||||||| || || |||||||||||||| || |||||||| || |||
gttagttttcttagctgatcttttgtttgggatcggtataagtattaaatttgatttgttcttgtggctgacttggttttactatctggaatctggatgtagATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTTCACCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208071033|gb|GD871794.1|GD871794
EST:     TACGAGGAAAGGTTCAAAAAGGAGACTCACGCTCTTTTCTTTTTAGCTAC                         ATATGGTGATGGTGAGCCAACTGATAATGCAGCGAGATTTTATAAATGGTT
genomic: TACGAGGAAAGGTTCAAAAAGGAGACTCACGCTCTTTTCTTTTTAGCTACgtgagtgtct ... gtgggtgtagATATGGTGATGGTGAGCCAACTGATAATGCAGCGAGATTTTATAAATGGTT
EST: gi|209703526|gb|BW678268.1|BW678268
EST:     ACGAGGAAAGGTTCAAAAAGGAGACTCACGGCTCTTTTCTTTTTAGCTAC                         ATATGGTGATGGTGAGCCAACTGATAATGC
genomic: ACGAGGAAAGGTTCAAAAAGGAGACTCACG-CTCTTTTCTTTTTAGCTACgtgagtgtct ... gtgggtgtagATATGGTGATGGTGAGCCAACTGATAATGC
EST: gi|209729001|gb|BW655031.1|BW655031
EST:     TACGAGGAAAGGTTCAAAAAGGAGACTCACGCTCTTTTCTTTTTAGCTAC                         ATATGGTGATGGTGAGCCAACTGATAATGCAGCGAGATTTTATAAATGGTT
genomic: TACGAGGAAAGGTTCAAAAAGGAGACTCACGCTCTTTTCTTTTTAGCTACgtgagtgtct ... gtgggtgtagATATGGTGATGGTGAGCCAACTGATAATGCAGCGAGATTTTATAAATGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctattaatatttctgtgcttgttattatttaatctgttgtggtgtgggtgtagATATGGTGATGGTGAGCCAACTGATAATGCAGCGAGATTTTATAAATGGTTTACGGAG
                    ttgttattatttaatc  TA-rich tract