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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaattgaactgatcccgttctgtctttcatttacattgttttgtttttcgccaatgtgtgagcgtgtgttatgtgaatgatgttgttctggaaaatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACG

Basic information

species Glycine max
transcript GLYMA13G00980.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00980.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G18876.2 (Arabidopsis thaliana), 3'ss of exon 1
gtgagaattgaactgatcccgttctgtctttcatttacattgttttgtttttcgccaatgtgtgagcgtgtgttatgtgaatgatgttgttctggaaaatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACG
                        ||  ||| | | |   | |  |  ||||      | | |     ||| | |||    ||||    |    |||  |||  |||||||| ||||| || |||||||||||| | |||   ||| | || ||||| || || || || ||||||||||| |||||||||||||| ||||||||
-----------------------gtgcgttttaatcattctctaattgttttttttcgtttatcgatttgtttgatgaagctgattcgat----gaacttgtattagGTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACG

upper sequence: GLYMA13G00980.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 3
gtgagaattgaactgatcccgttctgtctt-tcatttacattgttttgtttttcgccaatgtgtgagcgtgtgttatgtgaatgatgttgttctggaaaatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACG
                    || | |  |  |  |||    ||  |||||||  |    | || ||| | | ||| ||    |   ||| ||  |      |||||||||||| |||||| |||| || |||||||||||||   |||| |||||||| ||||| || ||||||||||| |||||||||||||| || ||||| ||
--------------------gtgcggagtggttgtttg---tggattgttttgtgtggttttgggagtg-gggttttgattgttgcgtttttgcgcttttggtggtagGTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284560|gb|AW597148.1|AW597148
EST:     TCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCC                         GTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGA
genomic: TCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCCgtgagaattg ... aatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgccaatgtgtgagcgtgtgttatgtgaatgatgttgttctggaaaatgtggtagGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACG
                                           aaaatgt  TA-rich tract