1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagattctgaccgtgctttcttttgtttctttgcgtggcttttgtacctggggaatgattactgactcgtggggatcttttgctcattatgcggtttcagTTTACCTGG
species | Glycine max |
transcript | GLYMA13G00950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAG TTTACCTGGEST: gi|37995737|gb|CF807326.1|CF807326
genomic: ATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAGgtaataatac ... gcggtttcagTTTACCTGG
EST: ATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAG TTTACCTGGEST: gi|6481417|gb|AW200688.1|AW200688
genomic: ATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAGgtaataatac ... gcggtttcagTTTACCTGG
EST: ATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAG TTTACCTGG
genomic: ATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAGgtaataatac ... gcggtttcagTTTACCTGG
acctggggaatgattactgactcgtggggatcttttgctcattatgcggtttcagTTTACCTGG
tactgac putative branch site (score: 1)
aatgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagattctgaccgtgctttcttttgtttctttgcgtggcttttgtacctggggaatgattactgactcgtggggatcttttgctcattatgcggtttcagTTTACCTGG
- - ttctgac
- - - - - - -tgctttc
- - - - - - - - - - - - - - - - - gtggctt
- - - - - - - - - - - - - - - - - - - - - -gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - -ggaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggga