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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctactcttctattctctttccatctcactctctaaccctaactaacacattctctccattttctgcagGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAG

Basic information

species Glycine max
transcript GLYMA12G36950.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165828|gb|HO008799.1|HO008799
EST:     ACCAGGGTTATGGTTTCGTTGAATTCCGCAGTGAAGAAGATGCTGACTAT                         GCCATCAAGGTGCTTAACACGATTAAGCTTTATGGCAAACCCATCCGTGTC
genomic: ACCAGGGTTATGGTTTCGTTGAATTCCGCAGTGAAGAAGATGCTGACTATgtatgctact ... ttttctgcagGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTC
EST: gi|18040641|gb|BM308944.1|BM308944
EST:     ACCAGGGTTATGGTTTCGTTGAATTCCGCAGTGAAGAAGATGCTGACTAT                         GCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTC
genomic: ACCAGGGTTATGGTTTCGTTGAATTCCGCAGTGAAGAAGATGCTGACTATgtatgctact ... ttttctgcagGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttccatctcactctctaaccctaactaacacattctctccattttctgcagGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAG
                          aactaac  putative branch site (score: 1)
                                  cattctctccattttc  CT-rich tract
                         taactaa  TA-rich tract