1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttttttaaagaaaaactatgcatgtgaatacatagtcaatcttttgctgcttttcttgagtatctaccaatgacaactttgttgctgaaatctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGC
species | Glycine max |
transcript | GLYMA12G35920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|9898823|gb|BE607791.1|BE607791
genomic: GATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|254322709|gb|GR835531.1|GR835531
genomic: GATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: TGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|26057434|gb|CA800348.1|CA800348
genomic: TGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCAEST: gi|11275094|gb|BF325417.1|BF325417
genomic: GATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
EST: GTTGGAAAGCTAAG CTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
genomic: GTTGGAAAGCTAAGgtaaagcttt ... atctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCA
tgctgcttttcttgagtatctaccaatgacaactttgttgctgaaatctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGC
tctccac CT-rich tract
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttaaagaaaaactatgcatgtgaatacatagtcaatcttttgctgcttttcttgagtatctaccaatgacaactttgttgctgaaatctccacagCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGC
- - - - aagaaaa
- - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct