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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccagtgttgtgctttgtttttttctggtggttattatgtgtgtctgtttgtttgatgattgattgactcaacctcctttttgtgatgccattaattgcagCTTCCTCCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAG

Basic information

species Glycine max
transcript GLYMA12G35490.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35490.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 3'ss of exon 4
--ccagtgttgtgctttgtttttttctggtggttat-tatgtgtgtctgtttgtttgatgattgattgactcaacctcctttttgtgatgccattaattgcagCTTCCTCCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAG
   |  | |    |||   |||| | |  ||||||  | |     | | |     |||||  |   | ||   || |     |    |    ||| ||||||||||||||| |||||||| ||||| || || ||||||||||||
gtacgttttcaatcttaaattttattttttggttagatgtagaaatttatgatcctgatggctaccttac---acttaaaagtcaaaa----atttattgcagCTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAG

upper sequence: GLYMA12G35490.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------------------------------------------------------------------------ccagtgttgtgctttgtttttttctggtggttattatgtgtgtctgtttgtttgatgattgattgactcaacctcctttttgtgatgccattaattgcagCTTCCTCCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAG
                                                                                                | | | | |   ||  || || | |   | ||   ||| |||| ||  | || | || ||||||             || || |   |||||||||||||||||||||||||||| || |||||||||||||||||||||
gtaagtaggagaacctcaaacacaaacgttctcttttgattgggtatttgataaaactaattaccattgtgtgggcaaatagtgggtgatttgataaatttggagaaatgggttctttttggcatcatgtcgtg-gtctatt-atatgttaat-gattgatgatgttcttagcttttggttgaattaattgcagCTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtttgatgattgattgactcaacctcctttttgtgatgccattaattgcagCTTCCTCCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAG
                                           cattaat  putative branch site (score: 3)
                                            attaatt  TA-rich tract