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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagttgtgcagtactaaggtatcatgtagttaatatttctgtatgatctttctgcatatttaccaatcttaaccatgtatgttcttttaatttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTA

Basic information

species Glycine max
transcript GLYMA12G34410.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34410.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 2
------cagttgtgcagtactaaggtatcatgtagttaatatttctgtatgatctttctgcatatttaccaatcttaaccatgtatgttcttttaatttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTA
         |  |||  |  ||  | |  ||||| | || | || |       |||   | |  ||| |   |  | || ||     |  ||||| || ||||||||||   ||  |||||||||||||||||||||| || || |||||||| ||||||||||| |||||||| || ||||||||| ||||||||||||||||||
catgaatgttcctgcc-tcttactgcaaaatgtaataaacacttttcc----ccttatggtagctttgcttgttattac-attaccctatttttatttgttctcagGTTCACTTACTGGGAAGGTTACATCATAGAAACCTCGTGAATTTGGTTGGGTATTGTGCCGAAAAGGGCCAGCATATGCTTATATATGTCTACATGAGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319138|gb|GR828866.1|GR828866
EST:     AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAG                         GTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGG
genomic: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataa ... tttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctttctgcatatttaccaatcttaaccatgtatgttcttttaatttttctcagGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTA
                                    ttcttttaatttttct  CT-rich tract
                             atgtatgttcttttaa  TA-rich tract