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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgagttcttcaacactttacataacccaacaggagtaatgcctttagtttggtggtttacactttttttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA

Basic information

species Glycine max
transcript GLYMA12G32860.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g42330.2 (Oryza sativa), 3'ss of exon 4
--------------gtattt-tgagttcttcaacactttacataacccaacaggagtaa--tgcctttagtttggtggtttacactttttttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA
              | |||| |   | ||     |  | | ||  ||       |||    | |  ||  |||       | |||  || |   |||||||||||| ||||| || || || |||||||||||||| |||| |||  ||||||| ||  | ||| ||||||| |||||||| ||||| |||  ||| |||||
tgcattgtctgctagcatttgtttctactgttgtagctaagatgccctttacaaagttgcttactatttatttacctaacttcacccttctc--ttttgcagCTGGCATTGTCATTGAAGATAAAAATTGGCCACCCTTTTTCCCTCTCATTCACCATAATATTTCAAATGAGATACCTATTCATCTACAAAGAATGCAGTA

upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G100809_T01 (Zea mays), 3'ss of exon 4
----------gtattttgagttcttcaacactttacataacccaacaggagta-atgcctttagtttgg----tggtttacactttttttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA
          | |||    ||  |  |||||  |  | ||  |        || ||   |  || |||     |    |  | | | ||   | || ||||||| ||||| ||||| |||||||||||||| || |||| |||| |||| || || |||||| | ||||| |||||||| ||||| |||   || || ||
agaatcagttggattggtggtggtaaaacaccctgaagaaatctcggttgctatatatttcgagcttgtgcactaacctttattatcttctatctttcagCTGGCATTGTGATAGAAGAGAAAAATTGGCCTCCCTTTTTCCCCCTCATCCACCATGACATTTCTAATGAGATACCTATCCATCTACAAAGGATGCAATA

upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G174730_T01 (Zea mays), 3'ss of exon 4
----gtattttgagttcttcaacactttaca---taacccaacaggagta-----atgcctttagtttggtggtttacactttt---tttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA
    |    |||  | |   ||| ||  |||   | |   || | | ||      ||   ||||||||      | ||  || |    || | ||| |||||||  |||| ||||| |||||||| ||||| || |||| |||| |||| || ||||||||| | |||||||||||||| ||||| |||   || |||||
catagagggttggataccctaaccctaaacaccctgaagaaatatgggttgttatatatttttagtttttccactaacctttgtcatcttttattttcagCTGGCGTTGTGATAGAAGAGAAAAACTGGCCTCCCTTTTTCCCCCTCATCCACCACGACATTTCCAATGAAATACCTATCCATCTACAAAGGATGCAGTA

upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G448715_T01 (Zea mays), 3'ss of exon 5
----------gtattttgagttcttcaacac---tttacataacccaacaggagtaatgcctttagtttggtggtttacactt--tttttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA
          | ||    | |  ||  |  |   |||  |  |   |       |  |  |   |||||    | ||||| ||  || ||  ||| |||||||| ||||| || ||||||||||||||||| ||||||   ||  |||| ||||| || ||    ||||| ||||| |  || ||||||  ||| || ||
cagggcattggcatgaaaattattttgatccatgtttttaagataaagttcattttgtttcacaagtttctaagcttacatttcattatttgtttggcagCTGGCATTGTCATTGAGGAGAAAAATTGGCCTCCTTTTATGCCACTCATCCATCATGATATCATCAATGAGATACCGAGTCACCTTCAAAGAATGCAATA

upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G041181_T01 (Zea mays), 3'ss of exon 5
---------gtattttgagttcttcaacac-tttacataacccaacaggagtaatgccttt-agtttggtg-gtttacactttt---tttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA
         ||  |     || ||     | | |   |||   ||      |  ||  |   || ||| |  | ||||| |||    |||  ||| |||||||| ||||| || ||||||||||||||||| ||||||   ||  |||| ||||| || ||  | ||||| ||||| |  || ||||||  ||| || ||
ctgggccttgtcatgaagattatttgttccatgtttttaatataaagctcattttgtttcagaggttgctaagcttacattttattattttgtttggcagCTGGCATTGTCATTGAGGAGAAAAATTGGCCTCCTTTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATA

upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
gtattttgagttcttcaacactttacataacccaacagg---agtaatgccttta---gtttggtggtttacactt--tttttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA
|| || |  ||| || |   | |||   || | |  |||   |||| ||  || |     |      | || |  |  || ||  ||| |||||||||||||| ||||||||||||||||||||||| |||| |||| | |||||||| |||||||||||||||||||| || ||||  ||     | |||||
gt-ttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccaacaggagtaatgcctttagtttggtggtttacactttttttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA
                                   cactttttttgttttt  CT-rich tract
                                    actttttttgttttt  TA-rich tract