Sequence
atgc intronic sequence ATGC exonic sequencegtatgcagttgtaactgaaaatttgctgcaaatgatctttttattaattttcaactttcttgtaaccatctgattgtttgtctgtaattaagGTTTCCATTCATTGCCTGCGAGATATTTACATGTGAAATTGATGTCATTTTGAAGACCTTGGTTGATGATGAAGAG
Basic information
species | Glycine max |
transcript | GLYMA12G29710.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G29710.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 3
gtatgcagttgtaactgaaaatttgctgcaaatgatcttttta-ttaattttc----aactttcttgtaaccatctgattgtttgtctgtaattaagGTTTCCATTCATTGCCTGCGAGATATTTACATGTGAAATTGATGTCATTTTGAAGACCTTGGTTGATGATGAAGAG
||| || | ||| | | |||||| || ||| | | ||||||| || ||||| ||| | | |||||| | || ||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||| || || || || || |||
gtacttcattctgactttaca--cagagcaaataatttttacaatcaattttctttcaaaattcttctaatgttgttcttgttt---catggtttagGTTCCCATTTATTGCCTGTGAGATATTTACTTGTGAAATTGATGTTATTTTTAAGACTTTAGTGGAGGAAGATGAG
upper sequence: GLYMA12G29710.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S188_88V6.1 (Physcomitrella patens), 3'ss of exon 3
-gtatgcagttgtaac--tgaaaatttgctgcaaatgatctttttattaattttcaactttcttgtaaccat-----ctgattgt--ttgtctgtaattaagGTTTCCATTCATTGCCTGCGAGATATTTACATGTGAAATTGATGTCATTTTGAAGACCTTGGTTGATGATGAAGAG
|| | ||||| | | | || | | | | | | | || | | || | | || || || | | | || | || ||||||||||||||||| || || || || |||||||| || |||||||| || ||||| || ||||| ||||| |||
gacttgaatttgtagcaatttgtagttatttcgtaagtttgtaatggtagtct--aataatgataaaaacaagggagctaagtctcattaccgcccatgcagGTTTCCATTCATTGCATGTGAAATTTTCACATGTGAGATAGATGTCATATTCAAGACTTTAGTTGAGGATGAGGAG
upper sequence: GLYMA12G29710.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S391_39V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------------------------------------------------gtatgcagttgtaactgaaaatttgctgcaaatgatctttttattaattttcaactttcttgtaaccat----ctgattgt--ttgtctgtaattaagGTTTCCATTCATTGCCTGCGAGATATTTACATGTGAAATTGATGTCATTTTGAAGACCTTGGTTGATGATGAAGAG
| |||| | | | || | || | | | ||||| | || | | || | | | | | | | || ||||||||||| ||||| ||||| || || ||||||||||| |||||||| || ||||| || ||||| ||||| |||
gtttgttatttctcacttcatagttgacctcaatcatttgtgcgacatctaatatagaacgtggtgtcgggttagtcctttgcccgcactttgattgatcattgacctaaacttttagtcctatacagtcatttattgtgtgagttttcgtggtggttaaatcaatgaagccaaatctcatcaccgtttatgcagGTTTCCATTTATTGCATGCGAAATTTTCACATGTGAAATAGATGTCATATTCAAGACTTTAGTTGAGGATGAGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttattaattttcaactttcttgtaaccatctgattgtttgtctgtaattaagGTTTCCATTCATTGCCTGCGAGATATTTACATGTGAAATTGATGTCATTTTGAAGACCTTGGTTGATGATGAAGAG
tttgtct CT-rich tract
attaattttcaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcagttgtaactgaaaatttgctgcaaatgatctttttattaattttcaactttcttgtaaccatctgattgtttgtctgtaattaagGTTTCCATTCATTGCCTGCGAGATATTTACATGTGAAATTGATGTCATTTTGAAGACCTTGGTTGATGATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA