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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaatcaaaggctcactgcctcactgctacatgcatgtgtgtaatgttattatcaagataagggcacagatatttagaggttaactcttttgaactgcagTCCTTTCACAAGTCTCACTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAG

Basic information

species Glycine max
transcript GLYMA12G29640.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29640.4 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 5
ctaatcaaaggctcactgcctcactgctacat-gcatgtgtgtaatgttattatcaagataagggcacagatatt---tagaggttaactcttttgaactgcagTCCTTTCACAAGTCTCACTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAG
    ||  ||   ||     |   |  |  || | |||| | |   |||  |||  |    |||   ||| ||||   ||    |  | | ||||||| || || |||||||||||||||| ||   |||||| |||||||| || || || || ||||||||||||||||| || |||
---gtcttagaaacataatataggtattttattggatgttt-tgtggttcgtatacaatggaggtttcagttattatgtatgaatgtaattttttgaattgtagGCCTTTCACAAGTCTCATTTGTTAAAGCTGCGAGTTGCTCCTTCAGAAACAGCCATGACTGATGTTCTTCGGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattatcaagataagggcacagatatttagaggttaactcttttgaactgcagTCCTTTCACAAGTCTCACTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAG
                                 ggttaac  putative branch site (score: 3)
                                       ctctttt  CT-rich tract
                      agatattta  TA-rich tract