1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtattgtagctgtctttgttctggttaattatagcctgattgtttctaattacagccatattcctaattacatttgggtctttatctgactataatttgagtaaattttataatggctatcttttatgttttcagGGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG
species | Glycine max |
transcript | GLYMA12G29450.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGG GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAGEST: gi|9564602|gb|BE474111.1|BE474111
genomic: GCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGgtattgtagc ... atgttttcagGGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG
EST: GCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGG GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAGEST: gi|20207861|gb|BQ133950.1|BQ133950
genomic: GCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGgtattgtagc ... atgttttcagGGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG
EST: GCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGG GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAGEST: gi|23731715|gb|BU763998.1|BU763998
genomic: GCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGgtattgtagc ... atgttttcagGGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG
EST: GCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGG GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG
genomic: GCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGgtattgtagc ... atgttttcagGGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG
tttatctgactataatttgagtaaattttataatggctatcttttatgttttcagGGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG
atctgac putative branch site (score: 3)
tcttttatgttttc putative PPT
tgactataatttgagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtagctgtctttgttctggttaattatagcctgattgtttctaattacagccatattcctaattacatttgggtctttatctgactataatttgagtaaattttataatggctatcttttatgttttcagGGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA