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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgataaaaatttagcttcaaattgatgcttgactcatggtaaattctgatttgtgatgtttgcttgcagTGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAATTCTTGGTTGCGTTTTGTGTGTCGTGGGATCTACAACAATTGTTTTGCAT

Basic information

species Glycine max
transcript GLYMA12G28940.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28940.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0035g00720.t01 (Vitis vinifera), 3'ss of exon 3
gcatgataaaaattta-gcttcaaattgatgcttgactcatgg--taaattctgatttgtgatgtttgcttgcagTGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAATTCTTGGTTGCGTTTTGTGTGTCGTGGGATCTACAACAATTGTTTTGCAT
||||||||  || ||   ||  |  || |   ||||     |   | | | |||| || | || ||  | ||||||||||  |||||||||||||||||| |||||| |||||| |||||||| ||||||||||| ||| | ||||| ||||| ||||||||||||||| | |||
gcatgatagcaagttgcactatattttaaaatttgatctccgagtttagtgctgacttct-atattgtcatgcagTGCTGTACTTGCTCATATTATTTTAAGGGAGAAGCTACACATTTTTGGGATTCTTGGTTGTGTTCTTTGTGTTGTGGGTTCTACAACAATTGTTCTTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193318905|gb|FK283417.1|FK283417
EST:     GCCCCAGCTATATTGGTCACCCCTCTTGGTGCTCTTAGCATTATTATCAG                         TGCTGCTCTTGCTCAT
genomic: GCCCCAGCTATATTGGTCACCCCTCTTGGTGCTCTTAGCATTATTATCAGgcatgataaa ... ttgcttgcagTGCTGCTCTTGCTCAT
EST: gi|193662764|gb|FK606156.1|FK606156
EST:     GCCCCAGCTATATTGGTCACCCCTCTTGGTGCTCTTAGCATTATTATCAG                         TGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAAT
genomic: GCCCCAGCTATATTGGTCACCCCTCTTGGTGCTCTTAGCATTATTATCAGgcatgataaa ... ttgcttgcagTGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcaaattgatgcttgactcatggtaaattctgatttgtgatgtttgcttgcagTGCTGCTCTTGCTCATATTATTTTACGGGAGAGGCTACATATTTTTGGAATTCTTGGTTGCGTTTTGTGTGTCGTGGGATCTACAACAATTGTTTTGCAT
                             ttctgat  putative branch site (score: 3)
                                            tttgctt  putative PPT
                         taaattct  TA-rich tract